13 items (Opisthorchis viverrini) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_00318	Uncharacterized protein. (583 aa)
	T265_16124	Uncharacterized protein. (168 aa)
	T265_16358	Uncharacterized protein. (64 aa)
	T265_09662	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. (502 aa)
	T265_11520	Uncharacterized protein. (3148 aa)
	T265_08540	Uncharacterized protein. (161 aa)
	T265_07454	Uncharacterized protein. (1250 aa)
	T265_06492	G_PROTEIN_RECEP_F1_2 domain-containing protein. (450 aa)
	T265_06551	Uncharacterized protein; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family. (1077 aa)
	T265_02194	Uncharacterized protein. (1197 aa)
	T265_02367	Uncharacterized protein. (1119 aa)
	T265_04534	Uncharacterized protein. (943 aa)
	T265_02366	Uncharacterized protein. (1083 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_00318	T265_02194	A0A075AJS1	A0A074ZWP7	Uncharacterized protein.	Uncharacterized protein.	0.721
T265_00318	T265_02366	A0A075AJS1	A0A075AID9	Uncharacterized protein.	Uncharacterized protein.	0.721
T265_00318	T265_02367	A0A075AJS1	A0A075A722	Uncharacterized protein.	Uncharacterized protein.	0.583
T265_00318	T265_04534	A0A075AJS1	A0A075AGF4	Uncharacterized protein.	Uncharacterized protein.	0.721
T265_00318	T265_06551	A0A075AJS1	A0A074ZS11	Uncharacterized protein.	Uncharacterized protein; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family.	0.721
T265_00318	T265_08540	A0A075AJS1	A0A074ZD68	Uncharacterized protein.	Uncharacterized protein.	0.753
T265_00318	T265_09662	A0A075AJS1	A0A074Z553	Uncharacterized protein.	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	0.790
T265_00318	T265_11520	A0A075AJS1	A0A074Z974	Uncharacterized protein.	Uncharacterized protein.	0.583
T265_00318	T265_16124	A0A075AJS1	A0A074YU71	Uncharacterized protein.	Uncharacterized protein.	0.583
T265_00318	T265_16358	A0A075AJS1	A0A074YXV1	Uncharacterized protein.	Uncharacterized protein.	0.583
T265_02194	T265_00318	A0A074ZWP7	A0A075AJS1	Uncharacterized protein.	Uncharacterized protein.	0.721
T265_02194	T265_02367	A0A074ZWP7	A0A075A722	Uncharacterized protein.	Uncharacterized protein.	0.400
T265_02194	T265_07454	A0A074ZWP7	A0A074ZH39	Uncharacterized protein.	Uncharacterized protein.	0.676
T265_02194	T265_11520	A0A074ZWP7	A0A074Z974	Uncharacterized protein.	Uncharacterized protein.	0.400
T265_02194	T265_16124	A0A074ZWP7	A0A074YU71	Uncharacterized protein.	Uncharacterized protein.	0.400
T265_02194	T265_16358	A0A074ZWP7	A0A074YXV1	Uncharacterized protein.	Uncharacterized protein.	0.400
T265_02366	T265_00318	A0A075AID9	A0A075AJS1	Uncharacterized protein.	Uncharacterized protein.	0.721
T265_02366	T265_02367	A0A075AID9	A0A075A722	Uncharacterized protein.	Uncharacterized protein.	0.400
T265_02366	T265_07454	A0A075AID9	A0A074ZH39	Uncharacterized protein.	Uncharacterized protein.	0.676
T265_02366	T265_11520	A0A075AID9	A0A074Z974	Uncharacterized protein.	Uncharacterized protein.	0.400