55 items (Opisthorchis viverrini) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_01557	Uncharacterized protein. (560 aa)
	T265_11658	CUB domain-containing protein. (1227 aa)
	T265_11218	Uncharacterized protein. (114 aa)
	T265_10398	Uncharacterized protein. (2023 aa)
	T265_11437	DUF4550 domain-containing protein. (878 aa)
	T265_09312	Uncharacterized protein. (1002 aa)
	T265_08937	Tyrosinase_Cu-bd domain-containing protein. (482 aa)
	T265_14653	Uncharacterized protein. (220 aa)
	T265_08544	WD_REPEATS_REGION domain-containing protein. (860 aa)
	T265_00261	Uncharacterized protein. (931 aa)
	T265_08481	Uncharacterized protein. (654 aa)
	T265_11217	Uncharacterized protein. (91 aa)
	T265_07578	Uncharacterized protein. (507 aa)
	T265_10775	SprT-like domain-containing protein. (484 aa)
	T265_14692	ENDO3c domain-containing protein. (323 aa)
	T265_08857	DNA ligase. (1154 aa)
	T265_08733	Uncharacterized protein. (161 aa)
	T265_06080	Tyrosinase_Cu-bd domain-containing protein. (218 aa)
	T265_08883	Uncharacterized protein. (228 aa)
	T265_14119	Uncharacterized protein. (1633 aa)
	T265_08575	Uncharacterized protein. (686 aa)
	T265_05531	Uncharacterized protein. (1855 aa)
	T265_13978	Uncharacterized protein. (2777 aa)
	T265_07987	Uncharacterized protein. (1149 aa)
	T265_04946	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. (409 aa)
	T265_14381	Uncharacterized protein. (1442 aa)
	T265_07576	UmuC domain-containing protein. (435 aa)
	T265_07445	Ku domain-containing protein. (1284 aa)
	T265_13638	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. Opsin subfamily. (503 aa)
	T265_03634	XPA_C domain-containing protein. (429 aa)
	T265_03124	S1 motif domain-containing protein. (329 aa)
	T265_13071	Uncharacterized protein. (459 aa)
	T265_02897	UmuC domain-containing protein. (822 aa)
	T265_13334	Uncharacterized protein. (687 aa)
	T265_02401	Protein kinase domain-containing protein. (2254 aa)
	T265_11801	Uncharacterized protein; Belongs to the MT-A70-like family. (624 aa)
	T265_02098	Uncharacterized protein. (493 aa)
	T265_02097	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (2379 aa)
	T265_02041	Uncharacterized protein. (1310 aa)
	T265_10513	Uncharacterized protein. (182 aa)
	T265_01035	DNA repair protein RAD51 homolog; Binds to single and double-stranded DNA and exhibits DNA- dependent ATPase activity. Underwinds duplex DNA. Belongs to the RecA family. RAD51 subfamily. (365 aa)
	T265_09560	Uncharacterized protein. (342 aa)
	T265_12502	Uncharacterized protein. (600 aa)
	T265_00347	Uncharacterized protein. (1449 aa)
	T265_02528	RWD domain protein. (329 aa)
	T265_00138	Helicase ATP-binding domain-containing protein. (846 aa)
	T265_14594	Uncharacterized protein. (128 aa)
	T265_12593	G_PROTEIN_RECEP_F1_2 domain-containing protein. (352 aa)
	T265_00205	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (3232 aa)
	T265_06081	Uncharacterized protein. (345 aa)
	T265_13682	Uncharacterized protein. (566 aa)
	T265_13666	Uncharacterized protein. (1088 aa)
	T265_05041	Uncharacterized protein. (2064 aa)
	T265_04495	Ku domain-containing protein. (974 aa)
	T265_04386	Uncharacterized protein. (1966 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_00138	T265_00205	A0A075A7E3	A0A075AD54	Helicase ATP-binding domain-containing protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.712
T265_00138	T265_00261	A0A075A7E3	A0A075AJW4	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.999
T265_00138	T265_00347	A0A075A7E3	A0A075A6C3	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.606
T265_00138	T265_01035	A0A075A7E3	A0A075A3T3	Helicase ATP-binding domain-containing protein.	DNA repair protein RAD51 homolog; Binds to single and double-stranded DNA and exhibits DNA- dependent ATPase activity. Underwinds duplex DNA. Belongs to the RecA family. RAD51 subfamily.	0.746
T265_00138	T265_02041	A0A075A7E3	A0A075A0P3	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.665
T265_00138	T265_02097	A0A075A7E3	A0A075A0G4	Helicase ATP-binding domain-containing protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.653
T265_00138	T265_02098	A0A075A7E3	A0A074ZWB3	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.653
T265_00138	T265_02897	A0A075A7E3	A0A074ZUG3	Helicase ATP-binding domain-containing protein.	UmuC domain-containing protein.	0.413
T265_00138	T265_03634	A0A075A7E3	A0A074ZRV3	Helicase ATP-binding domain-containing protein.	XPA_C domain-containing protein.	0.983
T265_00138	T265_04386	A0A075A7E3	A0A075AGL6	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.431
T265_00138	T265_04495	A0A075A7E3	A0A075AGG9	Helicase ATP-binding domain-containing protein.	Ku domain-containing protein.	0.517
T265_00138	T265_07445	A0A075A7E3	A0A074ZNT4	Helicase ATP-binding domain-containing protein.	Ku domain-containing protein.	0.538
T265_00138	T265_07576	A0A075A7E3	A0A074ZND0	Helicase ATP-binding domain-containing protein.	UmuC domain-containing protein.	0.413
T265_00138	T265_07578	A0A075A7E3	A0A074ZC08	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.413
T265_00138	T265_07987	A0A075A7E3	A0A074ZLR0	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.943
T265_00138	T265_08481	A0A075A7E3	A0A074Z937	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.818
T265_00138	T265_08857	A0A075A7E3	A0A074ZCA3	Helicase ATP-binding domain-containing protein.	DNA ligase.	0.533
T265_00138	T265_08883	A0A075A7E3	A0A074ZIP3	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.480
T265_00138	T265_09560	A0A075A7E3	A0A075A4H8	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.872
T265_00138	T265_11217	A0A075A7E3	A0A074ZAE5	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.606