5 items (Opisthorchis viverrini) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_07445	Ku domain-containing protein. (1284 aa)
	T265_13334	Uncharacterized protein. (687 aa)
	T265_04495	Ku domain-containing protein. (974 aa)
	T265_04386	Uncharacterized protein. (1966 aa)
	T265_14381	Uncharacterized protein. (1442 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_04386	T265_04495	A0A075AGL6	A0A075AGG9	Uncharacterized protein.	Ku domain-containing protein.	0.521
T265_04386	T265_07445	A0A075AGL6	A0A074ZNT4	Uncharacterized protein.	Ku domain-containing protein.	0.572
T265_04495	T265_04386	A0A075AGG9	A0A075AGL6	Ku domain-containing protein.	Uncharacterized protein.	0.521
T265_04495	T265_07445	A0A075AGG9	A0A074ZNT4	Ku domain-containing protein.	Ku domain-containing protein.	0.999
T265_04495	T265_14381	A0A075AGG9	A0A074ZMJ9	Ku domain-containing protein.	Uncharacterized protein.	0.544
T265_07445	T265_04386	A0A074ZNT4	A0A075AGL6	Ku domain-containing protein.	Uncharacterized protein.	0.572
T265_07445	T265_04495	A0A074ZNT4	A0A075AGG9	Ku domain-containing protein.	Ku domain-containing protein.	0.999
T265_07445	T265_14381	A0A074ZNT4	A0A074ZMJ9	Ku domain-containing protein.	Uncharacterized protein.	0.435
T265_14381	T265_04495	A0A074ZMJ9	A0A075AGG9	Uncharacterized protein.	Ku domain-containing protein.	0.544
T265_14381	T265_07445	A0A074ZMJ9	A0A074ZNT4	Uncharacterized protein.	Ku domain-containing protein.	0.435