(6 nodes) Cdc73/Paf1 complex network (Opisthorchis viverrini)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_09719	TPR_REGION domain-containing protein. (1256 aa)
	T265_14327	WD_REPEATS_REGION domain-containing protein. (318 aa)
	T265_13585	Uncharacterized protein. (496 aa)
	T265_08694	Plus3 domain-containing protein. (828 aa)
	T265_13266	Uncharacterized protein. (667 aa)
	T265_08010	CDC73_N domain-containing protein. (501 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_08010	T265_08694	A0A075A9R3	A0A074Z885	CDC73_N domain-containing protein.	Plus3 domain-containing protein.	0.952
T265_08010	T265_09719	A0A075A9R3	A0A074ZFT5	CDC73_N domain-containing protein.	TPR_REGION domain-containing protein.	0.974
T265_08010	T265_13585	A0A075A9R3	A0A074ZRH7	CDC73_N domain-containing protein.	Uncharacterized protein.	0.999
T265_08010	T265_14327	A0A075A9R3	A0A074ZNE1	CDC73_N domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.968
T265_08694	T265_08010	A0A074Z885	A0A075A9R3	Plus3 domain-containing protein.	CDC73_N domain-containing protein.	0.952
T265_08694	T265_09719	A0A074Z885	A0A074ZFT5	Plus3 domain-containing protein.	TPR_REGION domain-containing protein.	0.998
T265_08694	T265_13266	A0A074Z885	A0A074ZVS8	Plus3 domain-containing protein.	Uncharacterized protein.	0.952
T265_08694	T265_13585	A0A074Z885	A0A074ZRH7	Plus3 domain-containing protein.	Uncharacterized protein.	0.999
T265_08694	T265_14327	A0A074Z885	A0A074ZNE1	Plus3 domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.918
T265_09719	T265_08010	A0A074ZFT5	A0A075A9R3	TPR_REGION domain-containing protein.	CDC73_N domain-containing protein.	0.974
T265_09719	T265_08694	A0A074ZFT5	A0A074Z885	TPR_REGION domain-containing protein.	Plus3 domain-containing protein.	0.998
T265_09719	T265_13266	A0A074ZFT5	A0A074ZVS8	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.974
T265_09719	T265_13585	A0A074ZFT5	A0A074ZRH7	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.999
T265_09719	T265_14327	A0A074ZFT5	A0A074ZNE1	TPR_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.993
T265_13266	T265_08694	A0A074ZVS8	A0A074Z885	Uncharacterized protein.	Plus3 domain-containing protein.	0.952
T265_13266	T265_09719	A0A074ZVS8	A0A074ZFT5	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.974
T265_13266	T265_13585	A0A074ZVS8	A0A074ZRH7	Uncharacterized protein.	Uncharacterized protein.	0.999
T265_13266	T265_14327	A0A074ZVS8	A0A074ZNE1	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.968
T265_13585	T265_08010	A0A074ZRH7	A0A075A9R3	Uncharacterized protein.	CDC73_N domain-containing protein.	0.999
T265_13585	T265_08694	A0A074ZRH7	A0A074Z885	Uncharacterized protein.	Plus3 domain-containing protein.	0.999