(100 nodes) Nuclear speck network (Opisthorchis viverrini)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_13018	Non-specific serine/threonine protein kinase. (751 aa)
	T265_12071	RRM domain-containing protein. (77 aa)
	T265_15666	Uncharacterized protein. (249 aa)
	T265_11890	RRM domain-containing protein. (700 aa)
	T265_11847	WD_REPEATS_REGION domain-containing protein. (364 aa)
	T265_11303	Reverse transcriptase domain-containing protein. (919 aa)
	T265_11891	Uncharacterized protein. (85 aa)
	T265_11882	SF3b1 domain-containing protein. (1307 aa)
	T265_15151	DNA-(apurinic or apyrimidinic site) lyase; Belongs to the DNA repair enzymes AP/ExoA family. (238 aa)
	T265_10232	C2H2-type domain-containing protein. (433 aa)
	T265_15093	Protein kinase domain-containing protein. (735 aa)
	T265_10209	Uncharacterized protein. (2407 aa)
	T265_09798	RING-type domain-containing protein. (1318 aa)
	T265_02352	C2H2-type domain-containing protein. (790 aa)
	T265_10985	WW domain-containing protein. (589 aa)
	T265_10890	WD_REPEATS_REGION domain-containing protein. (923 aa)
	T265_16058	Uncharacterized protein. (103 aa)
	T265_09277	Peptidase A2 domain-containing protein. (489 aa)
	T265_08740	Uncharacterized protein. (422 aa)
	T265_08719	Slu7 domain-containing protein. (717 aa)
	T265_08601	Uncharacterized protein. (1717 aa)
	T265_08650	Uncharacterized protein. (167 aa)
	T265_08390	Uncharacterized protein. (2735 aa)
	T265_11508	SFM domain-containing protein. (320 aa)
	T265_11132	PWI domain-containing protein. (247 aa)
	T265_10913	Uncharacterized protein. (137 aa)
	T265_14692	ENDO3c domain-containing protein. (323 aa)
	T265_07598	Nop domain-containing protein. (895 aa)
	T265_07574	Uncharacterized protein. (606 aa)
	T265_14331	Uncharacterized protein. (3633 aa)
	T265_07048	Uncharacterized protein. (576 aa)
	T265_06958	FHA domain protein. (422 aa)
	T265_14961	Uncharacterized protein. (1068 aa)
	T265_07849	WD domain, G-beta repeat protein. (456 aa)
	SRP54	Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily. (518 aa)
	T265_06384	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (397 aa)
	T265_06433	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (576 aa)
	T265_06290	Uncharacterized protein. (763 aa)
	T265_09179	RPOL4c domain-containing protein. (260 aa)
	T265_08883	Uncharacterized protein. (228 aa)
	T265_08739	Uncharacterized protein. (266 aa)
	T265_08656	Uncharacterized protein. (972 aa)
	T265_06653	Uncharacterized protein. (260 aa)
	T265_08480	Uncharacterized protein. (236 aa)
	T265_05143	Uncharacterized protein. (536 aa)
	T265_13761	Uncharacterized protein. (256 aa)
	T265_06228	Uncharacterized protein. (575 aa)
	T265_14467	Uncharacterized protein. (358 aa)
	T265_13894	Diacylglycerol kinase. (1360 aa)
	T265_04787	Uncharacterized protein. (416 aa)
	T265_05862	DUF2040 domain-containing protein. (419 aa)
	T265_04383	YTH domain-containing protein. (918 aa)
	T265_13480	Uncharacterized protein. (137 aa)
	T265_06949	DEAD/DEAH box helicase. (426 aa)
	T265_04950	U1-type domain-containing protein. (275 aa)
	T265_16154	U-box domain-containing protein. (118 aa)
	T265_13217	Uncharacterized protein. (819 aa)
	T265_06230	Uncharacterized protein. (717 aa)
	T265_03201	Tudor domain-containing protein. (213 aa)
	T265_16000	PWI domain-containing protein. (200 aa)
	T265_13058	Uncharacterized protein. (1450 aa)
	T265_15604	Deacetylase sirtuin-type domain-containing protein. (466 aa)
	T265_11801	Uncharacterized protein; Belongs to the MT-A70-like family. (624 aa)
	T265_02271	RRM domain-containing protein. (157 aa)
	T265_02288	Uncharacterized protein; Belongs to the cyclin family. (637 aa)
	T265_03246	Uncharacterized protein. (436 aa)
	T265_13150	Uncharacterized protein. (887 aa)
	T265_13082	HECT domain-containing protein. (1676 aa)
	T265_01927	Uncharacterized protein. (262 aa)
	T265_01519	Diacylglycerol kinase. (1321 aa)
	T265_12708	Uncharacterized protein. (648 aa)
	T265_10549	HECT domain-containing protein. (3250 aa)
	T265_10312	Uncharacterized protein; Belongs to the NDK family. (801 aa)
	T265_00580	Uncharacterized protein. (641 aa)
	T265_01466	Uncharacterized protein. (650 aa)
	T265_12529	Uncharacterized protein. (1937 aa)
	T265_01341	Uncharacterized protein. (412 aa)
	T265_00300	Uncharacterized protein. (763 aa)
	T265_09760	Protein kinase domain-containing protein. (888 aa)
	T265_14910	Homeobox domain-containing protein. (536 aa)
	T265_00497	Uncharacterized protein. (151 aa)
	T265_09249	WW domain-containing protein. (469 aa)
	T265_09152	Uncharacterized protein. (890 aa)
	T265_02698	Uncharacterized protein. (96 aa)
	T265_00471	Uncharacterized protein. (515 aa)
	T265_00049	Uncharacterized protein. (234 aa)
	T265_01304	Uncharacterized protein; Belongs to the DEAD box helicase family. (664 aa)
	T265_01122	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (177 aa)
	T265_07692	RRM domain-containing protein. (324 aa)
	T265_07600	Uncharacterized protein. (78 aa)
	T265_00997	Btz domain-containing protein. (780 aa)
	T265_00456	Uncharacterized protein. (398 aa)
	T265_00254	Uncharacterized protein. (684 aa)
	T265_14079	Uncharacterized protein. (339 aa)
	T265_06186	F-box domain-containing protein. (1003 aa)
	T265_05545	Uncharacterized protein. (937 aa)
	T265_05244	Uncharacterized protein. (318 aa)
	T265_05104	Uncharacterized protein. (500 aa)
	T265_13543	Uncharacterized protein. (1552 aa)
	T265_02604	Cir_N domain-containing protein. (261 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SRP54	T265_00471	A0A074ZG59	A0A075A655	Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily.	Uncharacterized protein.	0.522
T265_00300	T265_00997	A0A075A3A4	A0A075ABA5	Uncharacterized protein.	Btz domain-containing protein.	0.490
T265_00300	T265_01122	A0A075A3A4	A0A075AAL2	Uncharacterized protein.	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	0.507
T265_00300	T265_01304	A0A075A3A4	A0A075AA29	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.669
T265_00300	T265_02604	A0A075A3A4	A0A075AI54	Uncharacterized protein.	Cir_N domain-containing protein.	0.469
T265_00300	T265_04950	A0A075A3A4	A0A074ZQW9	Uncharacterized protein.	U1-type domain-containing protein.	0.825
T265_00300	T265_06228	A0A075A3A4	A0A074ZLC4	Uncharacterized protein.	Uncharacterized protein.	0.711
T265_00300	T265_06230	A0A075A3A4	A0A074ZT80	Uncharacterized protein.	Uncharacterized protein.	0.711
T265_00300	T265_06433	A0A075A3A4	A0A074ZGI3	Uncharacterized protein.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.638
T265_00300	T265_06949	A0A075A3A4	A0A074ZQR0	Uncharacterized protein.	DEAD/DEAH box helicase.	0.405
T265_00300	T265_07048	A0A075A3A4	A0A074ZED2	Uncharacterized protein.	Uncharacterized protein.	0.747
T265_00300	T265_07849	A0A075A3A4	A0A074ZFR4	Uncharacterized protein.	WD domain, G-beta repeat protein.	0.927
T265_00300	T265_08719	A0A075A3A4	A0A074Z861	Uncharacterized protein.	Slu7 domain-containing protein.	0.931
T265_00300	T265_10209	A0A075A3A4	A0A074Z386	Uncharacterized protein.	Uncharacterized protein.	0.574
T265_00300	T265_11132	A0A075A3A4	A0A074ZAN6	Uncharacterized protein.	PWI domain-containing protein.	0.461
T265_00300	T265_11303	A0A075A3A4	A0A074YZ41	Uncharacterized protein.	Reverse transcriptase domain-containing protein.	0.882
T265_00300	T265_11508	A0A075A3A4	A0A074Z996	Uncharacterized protein.	SFM domain-containing protein.	0.623
T265_00300	T265_11847	A0A075A3A4	A0A074YXG7	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.851
T265_00300	T265_11882	A0A075A3A4	A0A074Z1D1	Uncharacterized protein.	SF3b1 domain-containing protein.	0.893
T265_00300	T265_13217	A0A075A3A4	A0A074ZT19	Uncharacterized protein.	Uncharacterized protein.	0.574