19 items (Opisthorchis viverrini) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_07882	Uncharacterized protein. (618 aa)
	T265_01839	Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family. (370 aa)
	T265_08191	Orotidine 5'-phosphate decarboxylase; Belongs to the OMP decarboxylase family. (1474 aa)
	T265_04119	NAD(P)-bd_dom domain-containing protein. (324 aa)
	T265_01840	Uncharacterized protein. (681 aa)
	T265_01221	Uncharacterized protein. (323 aa)
	T265_08027	Uncharacterized protein. (529 aa)
	T265_10506	Uncharacterized protein. (201 aa)
	T265_11156	Uncharacterized protein. (565 aa)
	T265_06709	Uncharacterized protein. (172 aa)
	T265_05309	Phosphoenolpyruvate carboxykinase. (636 aa)
	T265_03298	Uncharacterized protein. (530 aa)
	T265_01360	Aspartate aminotransferase. (411 aa)
	T265_00374	Uncharacterized protein. (236 aa)
	T265_00373	Uncharacterized protein. (175 aa)
	T265_09319	FAA_hydrolase domain-containing protein. (95 aa)
	T265_10505	Uncharacterized protein. (704 aa)
	T265_10507	Reverse transcriptase domain-containing protein. (262 aa)
	T265_12524	Uncharacterized protein. (646 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_00373	T265_10505	A0A075AJT4	A0A074Z216	Uncharacterized protein.	Uncharacterized protein.	0.542
T265_00373	T265_10506	A0A075AJT4	A0A074Z6A5	Uncharacterized protein.	Uncharacterized protein.	0.510
T265_00373	T265_10507	A0A075AJT4	A0A074Z272	Uncharacterized protein.	Reverse transcriptase domain-containing protein.	0.541
T265_00373	T265_12524	A0A075AJT4	A0A075A2J1	Uncharacterized protein.	Uncharacterized protein.	0.830
T265_00374	T265_01360	A0A075AD02	A0A075AAB3	Uncharacterized protein.	Aspartate aminotransferase.	0.921
T265_00374	T265_03298	A0A075AD02	A0A074ZS54	Uncharacterized protein.	Uncharacterized protein.	0.911
T265_00374	T265_10505	A0A075AD02	A0A074Z216	Uncharacterized protein.	Uncharacterized protein.	0.953
T265_00374	T265_10506	A0A075AD02	A0A074Z6A5	Uncharacterized protein.	Uncharacterized protein.	0.516
T265_00374	T265_10507	A0A075AD02	A0A074Z272	Uncharacterized protein.	Reverse transcriptase domain-containing protein.	0.920
T265_00374	T265_12524	A0A075AD02	A0A075A2J1	Uncharacterized protein.	Uncharacterized protein.	0.993
T265_01221	T265_08027	A0A075A077	A0A075A9S9	Uncharacterized protein.	Uncharacterized protein.	0.909
T265_01360	T265_00374	A0A075AAB3	A0A075AD02	Aspartate aminotransferase.	Uncharacterized protein.	0.921
T265_01360	T265_03298	A0A075AAB3	A0A074ZS54	Aspartate aminotransferase.	Uncharacterized protein.	0.919
T265_01360	T265_05309	A0A075AAB3	A0A074ZKX7	Aspartate aminotransferase.	Phosphoenolpyruvate carboxykinase.	0.826
T265_01360	T265_06709	A0A075AAB3	A0A074ZFJ2	Aspartate aminotransferase.	Uncharacterized protein.	0.872
T265_01360	T265_07882	A0A075AAB3	A0A074ZAX5	Aspartate aminotransferase.	Uncharacterized protein.	0.826
T265_01360	T265_09319	A0A075AAB3	A0A074ZAL6	Aspartate aminotransferase.	FAA_hydrolase domain-containing protein.	0.725
T265_01360	T265_10505	A0A075AAB3	A0A074Z216	Aspartate aminotransferase.	Uncharacterized protein.	0.921
T265_01360	T265_10507	A0A075AAB3	A0A074Z272	Aspartate aminotransferase.	Reverse transcriptase domain-containing protein.	0.921
T265_01360	T265_12524	A0A075AAB3	A0A075A2J1	Aspartate aminotransferase.	Uncharacterized protein.	0.921