59 items (Opisthorchis viverrini) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_12939	Uncharacterized protein. (300 aa)
	T265_15966	tRNA-synt_1c_C domain-containing protein. (90 aa)
	T265_11843	RING-type domain-containing protein. (788 aa)
	T265_11668	DEAD/DEAH box helicase; Belongs to the DEAD box helicase family. (447 aa)
	T265_11084	UBA domain-containing protein. (1317 aa)
	LSM1	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (220 aa)
	T265_08112	Uncharacterized protein. (87 aa)
	T265_08055	Uncharacterized protein. (192 aa)
	T265_07644	Uncharacterized protein. (374 aa)
	T265_14563	CCHC-type domain-containing protein. (1835 aa)
	T265_01653	Uncharacterized protein. (418 aa)
	T265_10231	Uncharacterized protein. (2188 aa)
	T265_10186	YTH domain-containing protein. (785 aa)
	T265_14180	Uncharacterized protein. (405 aa)
	T265_06525	Uncharacterized protein. (366 aa)
	T265_06314	RRM domain-containing protein. (731 aa)
	T265_06276	Endo/exonuclease/phosphatase domain-containing protein. (867 aa)
	T265_06150	Uncharacterized protein; Belongs to the MT-A70-like family. (725 aa)
	T265_09179	RPOL4c domain-containing protein. (260 aa)
	T265_14581	Nudix hydrolase domain-containing protein; Belongs to the Nudix hydrolase family. (365 aa)
	T265_06526	Uncharacterized protein. (277 aa)
	T265_13768	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family. (858 aa)
	T265_05078	YTH domain-containing protein. (804 aa)
	T265_07537	mRNA_decap_C domain-containing protein. (557 aa)
	T265_07299	Uncharacterized protein. (106 aa)
	T265_13385	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family. (597 aa)
	T265_13370	Uncharacterized protein. (124 aa)
	T265_03929	RRM domain-containing protein. (1002 aa)
	T265_04168	Uncharacterized protein. (220 aa)
	T265_04013	Endo/exonuclease/phosphatase domain-containing protein. (335 aa)
	T265_14178	Endo/exonuclease/phosphatase domain-containing protein. (745 aa)
	T265_02910	Protein kinase domain-containing protein. (429 aa)
	T265_02916	Uncharacterized protein. (907 aa)
	T265_03124	S1 motif domain-containing protein. (329 aa)
	T265_13383	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family. (521 aa)
	T265_13104	Uncharacterized protein. (819 aa)
	T265_05797	Uncharacterized protein. (756 aa)
	T265_12092	Uncharacterized protein. (540 aa)
	T265_02735	Uncharacterized protein; Belongs to the argonaute family. (1013 aa)
	T265_02588	TPR_MLP1_2 domain-containing protein. (2563 aa)
	T265_02340	Uncharacterized protein. (440 aa)
	T265_15431	Uncharacterized protein. (606 aa)
	T265_02911	Protein kinase domain-containing protein. (624 aa)
	T265_15416	Agenet-like domain-containing protein. (751 aa)
	T265_02894	SAM domain-containing protein. (1388 aa)
	T265_02630	AA_TRNA_LIGASE_II domain-containing protein. (1171 aa)
	T265_02634	KH_dom_type_1 domain-containing protein. (389 aa)
	T265_00891	KH_dom_type_1 domain-containing protein. (323 aa)
	T265_01973	Uncharacterized protein. (408 aa)
	T265_03848	Pan3_PK domain-containing protein. (877 aa)
	T265_12526	KH_dom_type_1 domain-containing protein. (401 aa)
	T265_10037	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family. (288 aa)
	T265_08382	RNase_PH domain-containing protein. (793 aa)
	T265_01354	CAF1 family ribonuclease. (418 aa)
	T265_07214	Uncharacterized protein. (391 aa)
	T265_05615	Uncharacterized protein. (878 aa)
	T265_04877	Uncharacterized protein; Belongs to the nanos family. (477 aa)
	T265_04563	Uncharacterized protein. (399 aa)
	T265_13477	NOT2_3_5 domain-containing protein. (792 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSM1	T265_01354	A0A074Z2V9	A0A075AAA6	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	CAF1 family ribonuclease.	0.483
LSM1	T265_02916	A0A074Z2V9	A0A074ZTD8	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	Uncharacterized protein.	0.731
LSM1	T265_07537	A0A074Z2V9	A0A074ZNK1	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	mRNA_decap_C domain-containing protein.	0.798
LSM1	T265_11668	A0A074Z2V9	A0A074YXU2	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	DEAD/DEAH box helicase; Belongs to the DEAD box helicase family.	0.998
LSM1	T265_14581	A0A074Z2V9	A0A074ZK33	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	Nudix hydrolase domain-containing protein; Belongs to the Nudix hydrolase family.	0.838
T265_00891	T265_02634	A0A075A0J1	A0A074ZYK4	KH_dom_type_1 domain-containing protein.	KH_dom_type_1 domain-containing protein.	0.867
T265_00891	T265_07214	A0A075A0J1	A0A075AC98	KH_dom_type_1 domain-containing protein.	Uncharacterized protein.	0.738
T265_00891	T265_08382	A0A075A0J1	A0A075A8M0	KH_dom_type_1 domain-containing protein.	RNase_PH domain-containing protein.	0.556
T265_01354	LSM1	A0A075AAA6	A0A074Z2V9	CAF1 family ribonuclease.	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	0.483
T265_01354	T265_01653	A0A075AAA6	A0A075AIU0	CAF1 family ribonuclease.	Uncharacterized protein.	0.449
T265_01354	T265_01973	A0A075AAA6	A0A075A0V8	CAF1 family ribonuclease.	Uncharacterized protein.	0.950
T265_01354	T265_02340	A0A075AAA6	A0A074ZWB4	CAF1 family ribonuclease.	Uncharacterized protein.	0.938
T265_01354	T265_02735	A0A075AAA6	A0A074ZUU8	CAF1 family ribonuclease.	Uncharacterized protein; Belongs to the argonaute family.	0.425
T265_01354	T265_02916	A0A075AAA6	A0A074ZTD8	CAF1 family ribonuclease.	Uncharacterized protein.	0.800
T265_01354	T265_03848	A0A075AAA6	A0A075A1X8	CAF1 family ribonuclease.	Pan3_PK domain-containing protein.	0.600
T265_01354	T265_04013	A0A075AAA6	A0A074ZQG5	CAF1 family ribonuclease.	Endo/exonuclease/phosphatase domain-containing protein.	0.843
T265_01354	T265_04877	A0A075AAA6	A0A075AG13	CAF1 family ribonuclease.	Uncharacterized protein; Belongs to the nanos family.	0.426
T265_01354	T265_05078	A0A075AAA6	A0A074ZL03	CAF1 family ribonuclease.	YTH domain-containing protein.	0.630
T265_01354	T265_05615	A0A075AAA6	A0A075AF21	CAF1 family ribonuclease.	Uncharacterized protein.	0.946
T265_01354	T265_06276	A0A075AAA6	A0A074ZH02	CAF1 family ribonuclease.	Endo/exonuclease/phosphatase domain-containing protein.	0.950