11 items (Opisthorchis viverrini) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_07810	Uncharacterized protein. (583 aa)
	T265_14218	Uncharacterized protein. (1980 aa)
	T265_04621	Uncharacterized protein. (1186 aa)
	T265_04210	C2 domain-containing protein. (396 aa)
	T265_05210	Uncharacterized protein. (1956 aa)
	T265_16098	Uncharacterized protein. (120 aa)
	T265_04619	Uncharacterized protein. (452 aa)
	T265_15897	Uncharacterized protein. (72 aa)
	T265_14217	Uncharacterized protein. (206 aa)
	T265_05114	C2 domain-containing protein. (366 aa)
	T265_13414	Uncharacterized protein. (1381 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_04210	T265_13414	A0A074ZPW2	A0A075AH13	C2 domain-containing protein.	Uncharacterized protein.	0.629
T265_04619	T265_04621	A0A074ZZ30	A0A074ZN79	Uncharacterized protein.	Uncharacterized protein.	0.899
T265_04619	T265_05114	A0A074ZZ30	A0A074ZKP7	Uncharacterized protein.	C2 domain-containing protein.	0.521
T265_04619	T265_07810	A0A074ZZ30	A0A074ZMF2	Uncharacterized protein.	Uncharacterized protein.	0.521
T265_04619	T265_13414	A0A074ZZ30	A0A075AH13	Uncharacterized protein.	Uncharacterized protein.	0.994
T265_04621	T265_04619	A0A074ZN79	A0A074ZZ30	Uncharacterized protein.	Uncharacterized protein.	0.899
T265_04621	T265_05114	A0A074ZN79	A0A074ZKP7	Uncharacterized protein.	C2 domain-containing protein.	0.521
T265_04621	T265_07810	A0A074ZN79	A0A074ZMF2	Uncharacterized protein.	Uncharacterized protein.	0.521
T265_04621	T265_13414	A0A074ZN79	A0A075AH13	Uncharacterized protein.	Uncharacterized protein.	0.994
T265_05114	T265_04619	A0A074ZKP7	A0A074ZZ30	C2 domain-containing protein.	Uncharacterized protein.	0.521
T265_05114	T265_04621	A0A074ZKP7	A0A074ZN79	C2 domain-containing protein.	Uncharacterized protein.	0.521
T265_05114	T265_13414	A0A074ZKP7	A0A075AH13	C2 domain-containing protein.	Uncharacterized protein.	0.631
T265_05114	T265_14217	A0A074ZKP7	A0A074ZE02	C2 domain-containing protein.	Uncharacterized protein.	0.521
T265_05114	T265_14218	A0A074ZKP7	A0A075ACE3	C2 domain-containing protein.	Uncharacterized protein.	0.521
T265_05114	T265_16098	A0A074ZKP7	A0A074ZSY0	C2 domain-containing protein.	Uncharacterized protein.	0.521
T265_07810	T265_04619	A0A074ZMF2	A0A074ZZ30	Uncharacterized protein.	Uncharacterized protein.	0.521
T265_07810	T265_04621	A0A074ZMF2	A0A074ZN79	Uncharacterized protein.	Uncharacterized protein.	0.521
T265_07810	T265_13414	A0A074ZMF2	A0A075AH13	Uncharacterized protein.	Uncharacterized protein.	0.631
T265_07810	T265_14217	A0A074ZMF2	A0A074ZE02	Uncharacterized protein.	Uncharacterized protein.	0.521
T265_07810	T265_14218	A0A074ZMF2	A0A075ACE3	Uncharacterized protein.	Uncharacterized protein.	0.521