(31 nodes) Sarcomere network (Opisthorchis viverrini)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_01318	Uncharacterized protein. (1303 aa)
	T265_02141	Uncharacterized protein. (449 aa)
	T265_02403	Uncharacterized protein. (325 aa)
	T265_13977	ANK_REP_REGION domain-containing protein. (187 aa)
	T265_00826	Uncharacterized protein. (376 aa)
	T265_12695	LIM domain protein. (316 aa)
	T265_09254	Uncharacterized protein. (5727 aa)
	T265_00664	Uncharacterized protein. (522 aa)
	T265_03109	Uncharacterized protein. (4297 aa)
	T265_03099	Ig-like domain-containing protein. (213 aa)
	T265_01131	Uncharacterized protein. (2543 aa)
	T265_12767	Calponin-homology (CH) domain-containing protein. (7532 aa)
	T265_02321	Uncharacterized protein. (3063 aa)
	T265_02869	Uncharacterized protein. (905 aa)
	T265_04294	PDZ domain-containing protein. (170 aa)
	T265_04494	Uncharacterized protein. (696 aa)
	T265_07818	Uncharacterized protein. (357 aa)
	T265_05825	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family. (441 aa)
	T265_08923	Troponin. (364 aa)
	T265_05827	Uncharacterized protein. (326 aa)
	T265_14136	Uncharacterized protein. (329 aa)
	T265_09557	Uncharacterized protein. (507 aa)
	T265_09793	Uncharacterized protein. (753 aa)
	T265_09797	U-box domain-containing protein. (151 aa)
	T265_12242	Fibronectin type-III domain-containing protein. (179 aa)
	T265_14958	TPR_REGION domain-containing protein. (294 aa)
	T265_10911	Uncharacterized protein. (563 aa)
	T265_15841	Uncharacterized protein. (235 aa)
	T265_11274	Uncharacterized protein. (348 aa)
	T265_16180	Ig-like domain-containing protein. (115 aa)
	T265_15524	Calponin-homology (CH) domain-containing protein. (1418 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_00664	T265_00826	A0A075A5I1	A0A075ABV5	Uncharacterized protein.	Uncharacterized protein.	0.963
T265_00664	T265_02141	A0A075A5I1	A0A075AIH2	Uncharacterized protein.	Uncharacterized protein.	0.421
T265_00664	T265_02869	A0A075A5I1	A0A074ZTG1	Uncharacterized protein.	Uncharacterized protein.	0.577
T265_00664	T265_03099	A0A075A5I1	A0A075A4H7	Uncharacterized protein.	Ig-like domain-containing protein.	0.523
T265_00664	T265_03109	A0A075A5I1	A0A075A4I3	Uncharacterized protein.	Uncharacterized protein.	0.523
T265_00664	T265_04294	A0A075A5I1	A0A074ZT40	Uncharacterized protein.	PDZ domain-containing protein.	0.417
T265_00664	T265_04494	A0A075A5I1	A0A074ZSB2	Uncharacterized protein.	Uncharacterized protein.	0.963
T265_00664	T265_12695	A0A075A5I1	A0A075ABC6	Uncharacterized protein.	LIM domain protein.	0.417
T265_00664	T265_16180	A0A075A5I1	A0A074YYJ5	Uncharacterized protein.	Ig-like domain-containing protein.	0.523
T265_00826	T265_00664	A0A075ABV5	A0A075A5I1	Uncharacterized protein.	Uncharacterized protein.	0.963
T265_00826	T265_02141	A0A075ABV5	A0A075AIH2	Uncharacterized protein.	Uncharacterized protein.	0.553
T265_00826	T265_02869	A0A075ABV5	A0A074ZTG1	Uncharacterized protein.	Uncharacterized protein.	0.743
T265_00826	T265_04294	A0A075ABV5	A0A074ZT40	Uncharacterized protein.	PDZ domain-containing protein.	0.553
T265_00826	T265_12695	A0A075ABV5	A0A075ABC6	Uncharacterized protein.	LIM domain protein.	0.553
T265_02141	T265_00664	A0A075AIH2	A0A075A5I1	Uncharacterized protein.	Uncharacterized protein.	0.421
T265_02141	T265_00826	A0A075AIH2	A0A075ABV5	Uncharacterized protein.	Uncharacterized protein.	0.553
T265_02141	T265_02869	A0A075AIH2	A0A074ZTG1	Uncharacterized protein.	Uncharacterized protein.	0.810
T265_02141	T265_04494	A0A075AIH2	A0A074ZSB2	Uncharacterized protein.	Uncharacterized protein.	0.553
T265_02141	T265_07818	A0A075AIH2	A0A074ZMG1	Uncharacterized protein.	Uncharacterized protein.	0.496
T265_02869	T265_00664	A0A074ZTG1	A0A075A5I1	Uncharacterized protein.	Uncharacterized protein.	0.577