(40 nodes) Epithelial cell differentiation network (Opisthorchis viverrini)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_06590	Uncharacterized protein. (319 aa)
	T265_06595	Uncharacterized protein. (940 aa)
	T265_02852	Homeobox domain-containing protein. (500 aa)
	T265_03110	SB domain-containing protein. (578 aa)
	T265_13053	TPR_REGION domain-containing protein. (382 aa)
	T265_03075	Kinase domain protein. (1114 aa)
	T265_12862	Uncharacterized protein. (1083 aa)
	T265_10860	FZ domain-containing protein; Belongs to the G-protein coupled receptor Fz/Smo family. (1980 aa)
	T265_01776	Tyrosine-protein kinase. (1163 aa)
	T265_03689	Uncharacterized protein. (645 aa)
	T265_03694	Uncharacterized protein. (1798 aa)
	T265_00309	Uncharacterized protein. (259 aa)
	T265_12455	Uncharacterized protein. (871 aa)
	T265_00138	Helicase ATP-binding domain-containing protein. (846 aa)
	T265_00770	Homeobox domain-containing protein. (816 aa)
	T265_06594	Uncharacterized protein. (818 aa)
	T265_05823	Uncharacterized protein. (438 aa)
	T265_01932	Uncharacterized protein. (1776 aa)
	T265_00953	Helix-loop-helix DNA-binding domain protein. (366 aa)
	T265_14156	Uncharacterized protein. (118 aa)
	T265_15076	Uncharacterized protein. (831 aa)
	T265_07202	Uncharacterized protein. (1229 aa)
	T265_11013	Mothers against decapentaplegic homolog. (790 aa)
	T265_14453	Uncharacterized protein. (492 aa)
	T265_11444	Uncharacterized protein. (287 aa)
	T265_08775	Uncharacterized protein. (164 aa)
	T265_15090	Uncharacterized protein. (109 aa)
	T265_10190	CRAL-TRIO domain-containing protein. (243 aa)
	T265_11562	SH3 domain-containing protein. (683 aa)
	T265_10961	Uncharacterized protein. (2218 aa)
	T265_11076	Uncharacterized protein. (1263 aa)
	T265_16086	Uncharacterized protein. (94 aa)
	T265_11523	Uncharacterized protein. (671 aa)
	T265_11561	Uncharacterized protein. (164 aa)
	T265_12221	Uncharacterized protein. (45 aa)
	T265_12327	Uncharacterized protein. (87 aa)
	T265_16289	Uncharacterized protein. (64 aa)
	T265_06392	Uncharacterized protein. (408 aa)
	T265_06920	Uncharacterized protein. (577 aa)
	T265_07457	Uncharacterized protein. (286 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_00770	T265_07202	A0A075ABQ1	A0A074ZDF1	Homeobox domain-containing protein.	Uncharacterized protein.	0.506
T265_00953	T265_02852	A0A075AJA6	A0A074ZTM3	Helix-loop-helix DNA-binding domain protein.	Homeobox domain-containing protein.	0.469
T265_00953	T265_07202	A0A075AJA6	A0A074ZDF1	Helix-loop-helix DNA-binding domain protein.	Uncharacterized protein.	0.418
T265_01932	T265_10961	A0A075AIL4	A0A074Z0M6	Uncharacterized protein.	Uncharacterized protein.	0.958
T265_01932	T265_12327	A0A075AIL4	A0A074YU74	Uncharacterized protein.	Uncharacterized protein.	0.545
T265_01932	T265_16289	A0A075AIL4	A0A074YTQ0	Uncharacterized protein.	Uncharacterized protein.	0.445
T265_02852	T265_00953	A0A074ZTM3	A0A075AJA6	Homeobox domain-containing protein.	Helix-loop-helix DNA-binding domain protein.	0.469
T265_07202	T265_00770	A0A074ZDF1	A0A075ABQ1	Uncharacterized protein.	Homeobox domain-containing protein.	0.506
T265_07202	T265_00953	A0A074ZDF1	A0A075AJA6	Uncharacterized protein.	Helix-loop-helix DNA-binding domain protein.	0.418
T265_10961	T265_01932	A0A074Z0M6	A0A075AIL4	Uncharacterized protein.	Uncharacterized protein.	0.958
T265_10961	T265_12327	A0A074Z0M6	A0A074YU74	Uncharacterized protein.	Uncharacterized protein.	0.682
T265_10961	T265_16289	A0A074Z0M6	A0A074YTQ0	Uncharacterized protein.	Uncharacterized protein.	0.566
T265_12327	T265_01932	A0A074YU74	A0A075AIL4	Uncharacterized protein.	Uncharacterized protein.	0.545
T265_12327	T265_10961	A0A074YU74	A0A074Z0M6	Uncharacterized protein.	Uncharacterized protein.	0.682
T265_12327	T265_16289	A0A074YU74	A0A074YTQ0	Uncharacterized protein.	Uncharacterized protein.	0.425
T265_16289	T265_01932	A0A074YTQ0	A0A075AIL4	Uncharacterized protein.	Uncharacterized protein.	0.445
T265_16289	T265_10961	A0A074YTQ0	A0A074Z0M6	Uncharacterized protein.	Uncharacterized protein.	0.566
T265_16289	T265_12327	A0A074YTQ0	A0A074YU74	Uncharacterized protein.	Uncharacterized protein.	0.425