(55 nodes) Extracellular matrix network (Opisthorchis viverrini)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_12907	Uncharacterized protein. (262 aa)
	T265_11903	Fasciclin domain protein. (680 aa)
	T265_10797	Uncharacterized protein. (780 aa)
	T265_16352	Uncharacterized protein. (79 aa)
	T265_12351	Uncharacterized protein. (89 aa)
	T265_09020	Uncharacterized protein. (390 aa)
	T265_08920	Uncharacterized protein. (977 aa)
	T265_11611	Uncharacterized protein. (721 aa)
	T265_11551	Uncharacterized protein. (1627 aa)
	T265_15345	Uncharacterized protein. (1513 aa)
	T265_07902	Uncharacterized protein. (795 aa)
	T265_07899	Uncharacterized protein. (284 aa)
	T265_07838	SPARC_Ca_bdg domain-containing protein. (258 aa)
	T265_09021	Uncharacterized protein. (365 aa)
	T265_10681	Uncharacterized protein. (3584 aa)
	T265_07579	Uncharacterized protein. (442 aa)
	T265_14276	Uncharacterized protein; Belongs to the glypican family. (610 aa)
	T265_06773	Uncharacterized protein; Belongs to the glypican family. (906 aa)
	T265_06508	Uncharacterized protein; Belongs to the glypican family. (1099 aa)
	T265_06392	Uncharacterized protein. (408 aa)
	T265_09019	Uncharacterized protein. (212 aa)
	T265_14678	Uncharacterized protein. (1114 aa)
	T265_05181	Uncharacterized protein. (800 aa)
	T265_05343	Uncharacterized protein. (999 aa)
	T265_04204	Uncharacterized protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family. (525 aa)
	T265_13317	LAM_G_DOMAIN domain-containing protein. (227 aa)
	T265_06590	Uncharacterized protein. (319 aa)
	T265_06595	Uncharacterized protein. (940 aa)
	T265_04595	Laminin N-terminal domain-containing protein. (433 aa)
	T265_13449	Uncharacterized protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family. (471 aa)
	T265_06075	ZnMc domain-containing protein. (591 aa)
	T265_13108	Ig-like domain-containing protein. (848 aa)
	T265_11748	Uncharacterized protein. (138 aa)
	T265_02143	Uncharacterized protein. (270 aa)
	T265_02011	Uncharacterized protein. (478 aa)
	T265_13110	Uncharacterized protein. (1792 aa)
	T265_13062	Uncharacterized protein. (730 aa)
	T265_01650	Peptidase M12B domain-containing protein. (646 aa)
	T265_04384	Uncharacterized protein. (636 aa)
	T265_01912	Uncharacterized protein. (1893 aa)
	T265_03832	C-type lectin domain-containing protein. (2553 aa)
	T265_00466	Uncharacterized protein. (6760 aa)
	T265_00090	Uncharacterized protein. (942 aa)
	T265_14730	C2-set_2 domain-containing protein. (274 aa)
	T265_08536	LRRCT domain-containing protein. (1323 aa)
	T265_01894	Uncharacterized protein. (541 aa)
	T265_08461	NTR domain-containing protein. (372 aa)
	T265_01407	Uncharacterized protein. (114 aa)
	T265_14305	Uncharacterized protein. (513 aa)
	T265_12484	Uncharacterized protein. (1541 aa)
	T265_06594	Uncharacterized protein. (818 aa)
	T265_05535	Uncharacterized protein. (1813 aa)
	T265_05496	Uncharacterized protein. (814 aa)
	T265_03712	Uncharacterized protein; Belongs to the glypican family. (1063 aa)
	T265_00600	Uncharacterized protein. (2167 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_00466	T265_08920	A0A075A363	A0A074Z7E8	Uncharacterized protein.	Uncharacterized protein.	0.543
T265_00600	T265_01912	A0A075AJJ3	A0A075A150	Uncharacterized protein.	Uncharacterized protein.	0.441
T265_00600	T265_04595	A0A075AJJ3	A0A074ZS59	Uncharacterized protein.	Laminin N-terminal domain-containing protein.	0.597
T265_00600	T265_05343	A0A075AJJ3	A0A074ZKR2	Uncharacterized protein.	Uncharacterized protein.	0.541
T265_00600	T265_10681	A0A075AJJ3	A0A074ZCC3	Uncharacterized protein.	Uncharacterized protein.	0.468
T265_01912	T265_00600	A0A075A150	A0A075AJJ3	Uncharacterized protein.	Uncharacterized protein.	0.441
T265_01912	T265_05343	A0A075A150	A0A074ZKR2	Uncharacterized protein.	Uncharacterized protein.	0.440
T265_02143	T265_03832	A0A074ZWZ5	A0A075A290	Uncharacterized protein.	C-type lectin domain-containing protein.	0.703
T265_03832	T265_02143	A0A075A290	A0A074ZWZ5	C-type lectin domain-containing protein.	Uncharacterized protein.	0.703
T265_04204	T265_08920	A0A074ZPV0	A0A074Z7E8	Uncharacterized protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.	Uncharacterized protein.	0.543
T265_04595	T265_00600	A0A074ZS59	A0A075AJJ3	Laminin N-terminal domain-containing protein.	Uncharacterized protein.	0.597
T265_05343	T265_00600	A0A074ZKR2	A0A075AJJ3	Uncharacterized protein.	Uncharacterized protein.	0.541
T265_05343	T265_01912	A0A074ZKR2	A0A075A150	Uncharacterized protein.	Uncharacterized protein.	0.440
T265_05343	T265_07838	A0A074ZKR2	A0A074ZBK8	Uncharacterized protein.	SPARC_Ca_bdg domain-containing protein.	0.407
T265_05343	T265_07899	A0A074ZKR2	A0A074ZBC0	Uncharacterized protein.	Uncharacterized protein.	0.405
T265_05343	T265_10681	A0A074ZKR2	A0A074ZCC3	Uncharacterized protein.	Uncharacterized protein.	0.417
T265_05496	T265_08920	A0A075AF83	A0A074Z7E8	Uncharacterized protein.	Uncharacterized protein.	0.543
T265_05535	T265_08920	A0A075AF72	A0A074Z7E8	Uncharacterized protein.	Uncharacterized protein.	0.543
T265_06075	T265_06392	A0A074ZTK8	A0A074ZGC9	ZnMc domain-containing protein.	Uncharacterized protein.	0.490
T265_06075	T265_08461	A0A074ZTK8	A0A075A8B8	ZnMc domain-containing protein.	NTR domain-containing protein.	0.797