49 items (Opisthorchis viverrini) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_12187	Uncharacterized protein. (49 aa)
	T265_11899	MFS domain-containing protein. (479 aa)
	T265_15524	Calponin-homology (CH) domain-containing protein. (1418 aa)
	T265_16032	Uncharacterized protein. (252 aa)
	T265_15239	VPS10 domain-containing protein. (685 aa)
	T265_10018	Uncharacterized protein. (671 aa)
	T265_15921	Uncharacterized protein. (439 aa)
	T265_14191	Uncharacterized protein. (294 aa)
	T265_07518	CBF domain-containing protein. (585 aa)
	T265_07276	Uncharacterized protein. (340 aa)
	T265_07025	Uncharacterized protein. (96 aa)
	T265_14622	Uncharacterized protein. (532 aa)
	T265_05440	Uncharacterized protein. (523 aa)
	T265_06596	Uncharacterized protein. (1332 aa)
	T265_13687	Uncharacterized protein. (294 aa)
	T265_05023	Uncharacterized protein. (1099 aa)
	T265_05567	Uncharacterized protein. (1107 aa)
	T265_13485	Uncharacterized protein. (2686 aa)
	T265_03321	Uncharacterized protein. (1956 aa)
	T265_05695	FCP1 homology domain-containing protein. (747 aa)
	T265_02588	TPR_MLP1_2 domain-containing protein. (2563 aa)
	T265_02210	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (660 aa)
	T265_02529	Uncharacterized protein. (202 aa)
	T265_13642	ATG11 domain-containing protein. (1646 aa)
	T265_01615	Nuclear pore protein. (940 aa)
	T265_01365	Nudix hydrolase domain-containing protein. (271 aa)
	T265_04572	Glycolipid transfer protein. (227 aa)
	T265_12767	Calponin-homology (CH) domain-containing protein. (7532 aa)
	T265_12676	Zn-finger in Ran binding protein. (1055 aa)
	T265_01590	Uncharacterized protein. (958 aa)
	T265_12509	Uncharacterized protein. (417 aa)
	T265_03583	Oligosaccharide biosynthesis protein Alg14 like protein. (204 aa)
	T265_03325	Peptidase S59 domain-containing protein. (2304 aa)
	T265_00163	Uncharacterized protein. (2365 aa)
	T265_00133	Uncharacterized protein. (385 aa)
	T265_12508	Uncharacterized protein. (443 aa)
	T265_02452	Uncharacterized protein. (641 aa)
	T265_08445	Deacetylase sirtuin-type domain-containing protein. (947 aa)
	T265_01766	LEM domain-containing protein. (814 aa)
	T265_07729	C2H2-type domain-containing protein. (1247 aa)
	T265_12507	PHD-type domain-containing protein. (758 aa)
	T265_13733	Uncharacterized protein. (1958 aa)
	T265_05158	RRM Nup35-type domain-containing protein. (607 aa)
	T265_03925	Uncharacterized protein. (377 aa)
	T265_03661	Uncharacterized protein. (116 aa)
	T265_02451	Uncharacterized protein. (199 aa)
	T265_02212	Uncharacterized protein. (114 aa)
	T265_01318	Uncharacterized protein. (1303 aa)
	T265_00386	Uncharacterized protein. (560 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_00163	T265_01615	A0A075A3S2	A0A074ZY62	Uncharacterized protein.	Nuclear pore protein.	0.999
T265_00163	T265_02210	A0A075A3S2	A0A074ZVS4	Uncharacterized protein.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.995
T265_00163	T265_02212	A0A075A3S2	A0A075AIG0	Uncharacterized protein.	Uncharacterized protein.	0.995
T265_00163	T265_02588	A0A075A3S2	A0A074ZVL2	Uncharacterized protein.	TPR_MLP1_2 domain-containing protein.	0.966
T265_00163	T265_03325	A0A075A3S2	A0A075A3R3	Uncharacterized protein.	Peptidase S59 domain-containing protein.	0.999
T265_00163	T265_03925	A0A075A3S2	A0A075AH85	Uncharacterized protein.	Uncharacterized protein.	0.684
T265_00163	T265_05158	A0A075A3S2	A0A075AFL1	Uncharacterized protein.	RRM Nup35-type domain-containing protein.	0.986
T265_00163	T265_05440	A0A075A3S2	A0A074ZJM8	Uncharacterized protein.	Uncharacterized protein.	0.995
T265_00163	T265_05567	A0A075A3S2	A0A074ZNM7	Uncharacterized protein.	Uncharacterized protein.	0.407
T265_00163	T265_06596	A0A075A3S2	A0A074ZK15	Uncharacterized protein.	Uncharacterized protein.	0.480
T265_00163	T265_07276	A0A075A3S2	A0A074ZHN3	Uncharacterized protein.	Uncharacterized protein.	0.964
T265_00163	T265_07518	A0A075A3S2	A0A074ZH01	Uncharacterized protein.	CBF domain-containing protein.	0.423
T265_00163	T265_12676	A0A075A3S2	A0A075A0Z3	Uncharacterized protein.	Zn-finger in Ran binding protein.	0.989
T265_01318	T265_13485	A0A075AJ22	A0A074ZSR2	Uncharacterized protein.	Uncharacterized protein.	0.686
T265_01615	T265_00163	A0A074ZY62	A0A075A3S2	Nuclear pore protein.	Uncharacterized protein.	0.999
T265_01615	T265_02210	A0A074ZY62	A0A074ZVS4	Nuclear pore protein.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.914
T265_01615	T265_02212	A0A074ZY62	A0A075AIG0	Nuclear pore protein.	Uncharacterized protein.	0.914
T265_01615	T265_02588	A0A074ZY62	A0A074ZVL2	Nuclear pore protein.	TPR_MLP1_2 domain-containing protein.	0.926
T265_01615	T265_03325	A0A074ZY62	A0A075A3R3	Nuclear pore protein.	Peptidase S59 domain-containing protein.	0.997
T265_01615	T265_05158	A0A074ZY62	A0A075AFL1	Nuclear pore protein.	RRM Nup35-type domain-containing protein.	0.993