(7 nodes) P-body assembly network (Opisthorchis viverrini)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_02245	Uncharacterized protein. (679 aa)
	T265_11668	DEAD/DEAH box helicase; Belongs to the DEAD box helicase family. (447 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (161 aa)
	T265_07304	LSM14 domain-containing protein. (357 aa)
	T265_04013	Endo/exonuclease/phosphatase domain-containing protein. (335 aa)
	T265_13995	Uncharacterized protein. (975 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (104 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSM3	LSM4	A0A075A7R3	A0A074ZFN5	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
LSM3	T265_11668	A0A075A7R3	A0A074YXU2	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	DEAD/DEAH box helicase; Belongs to the DEAD box helicase family.	0.871
LSM3	T265_13995	A0A075A7R3	A0A074ZSV3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.852
LSM4	LSM3	A0A074ZFN5	A0A075A7R3	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
LSM4	T265_11668	A0A074ZFN5	A0A074YXU2	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	DEAD/DEAH box helicase; Belongs to the DEAD box helicase family.	0.945
LSM4	T265_13995	A0A074ZFN5	A0A074ZSV3	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.890
T265_02245	T265_11668	A0A075AIG8	A0A074YXU2	Uncharacterized protein.	DEAD/DEAH box helicase; Belongs to the DEAD box helicase family.	0.879
T265_02245	T265_13995	A0A075AIG8	A0A074ZSV3	Uncharacterized protein.	Uncharacterized protein.	0.495
T265_04013	T265_11668	A0A074ZQG5	A0A074YXU2	Endo/exonuclease/phosphatase domain-containing protein.	DEAD/DEAH box helicase; Belongs to the DEAD box helicase family.	0.757
T265_07304	T265_11668	A0A074ZHL0	A0A074YXU2	LSM14 domain-containing protein.	DEAD/DEAH box helicase; Belongs to the DEAD box helicase family.	0.951
T265_07304	T265_13995	A0A074ZHL0	A0A074ZSV3	LSM14 domain-containing protein.	Uncharacterized protein.	0.798
T265_11668	LSM3	A0A074YXU2	A0A075A7R3	DEAD/DEAH box helicase; Belongs to the DEAD box helicase family.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.871
T265_11668	LSM4	A0A074YXU2	A0A074ZFN5	DEAD/DEAH box helicase; Belongs to the DEAD box helicase family.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.945
T265_11668	T265_02245	A0A074YXU2	A0A075AIG8	DEAD/DEAH box helicase; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.879
T265_11668	T265_04013	A0A074YXU2	A0A074ZQG5	DEAD/DEAH box helicase; Belongs to the DEAD box helicase family.	Endo/exonuclease/phosphatase domain-containing protein.	0.757
T265_11668	T265_07304	A0A074YXU2	A0A074ZHL0	DEAD/DEAH box helicase; Belongs to the DEAD box helicase family.	LSM14 domain-containing protein.	0.951
T265_11668	T265_13995	A0A074YXU2	A0A074ZSV3	DEAD/DEAH box helicase; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.999
T265_13995	LSM3	A0A074ZSV3	A0A075A7R3	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.852
T265_13995	LSM4	A0A074ZSV3	A0A074ZFN5	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.890
T265_13995	T265_02245	A0A074ZSV3	A0A075AIG8	Uncharacterized protein.	Uncharacterized protein.	0.495