22 items (Opisthorchis viverrini) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_15989	Zinc_ribbon_16 domain-containing protein. (151 aa)
	T265_12366	Uncharacterized protein. (137 aa)
	T265_11589	Uncharacterized protein. (1720 aa)
	T265_08849	Uncharacterized protein. (1217 aa)
	T265_14328	Uncharacterized protein. (1345 aa)
	T265_07028	Uncharacterized protein. (460 aa)
	T265_14535	Uncharacterized protein. (64 aa)
	T265_04798	Uncharacterized protein. (1442 aa)
	T265_03124	S1 motif domain-containing protein. (329 aa)
	T265_03934	TOG domain-containing protein. (2826 aa)
	T265_03322	Uncharacterized protein. (608 aa)
	T265_02114	Uncharacterized protein. (305 aa)
	T265_04794	DEP domain-containing protein. (862 aa)
	T265_15308	Uncharacterized protein. (695 aa)
	T265_00896	UDENN FLCN/SMCR8-type domain-containing protein. (723 aa)
	T265_02981	Uncharacterized protein. (888 aa)
	T265_02528	RWD domain protein. (329 aa)
	T265_00022	BZIP transcription factor. (760 aa)
	T265_08788	Uncharacterized protein. (701 aa)
	T265_08500	Uncharacterized protein. (418 aa)
	T265_14534	Uncharacterized protein. (70 aa)
	T265_07027	Uncharacterized protein. (3998 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_00896	T265_02981	A0A075A1J2	A0A075A4X9	UDENN FLCN/SMCR8-type domain-containing protein.	Uncharacterized protein.	0.540
T265_00896	T265_08500	A0A075A1J2	A0A075A850	UDENN FLCN/SMCR8-type domain-containing protein.	Uncharacterized protein.	0.979
T265_00896	T265_08788	A0A075A1J2	A0A075A784	UDENN FLCN/SMCR8-type domain-containing protein.	Uncharacterized protein.	0.600
T265_00896	T265_11589	A0A075A1J2	A0A074Z2I4	UDENN FLCN/SMCR8-type domain-containing protein.	Uncharacterized protein.	0.529
T265_00896	T265_14328	A0A075A1J2	A0A074ZCH1	UDENN FLCN/SMCR8-type domain-containing protein.	Uncharacterized protein.	0.528
T265_00896	T265_14534	A0A075A1J2	A0A075A8R3	UDENN FLCN/SMCR8-type domain-containing protein.	Uncharacterized protein.	0.807
T265_00896	T265_14535	A0A075A1J2	A0A074ZKK4	UDENN FLCN/SMCR8-type domain-containing protein.	Uncharacterized protein.	0.807
T265_02114	T265_02981	A0A074ZXE5	A0A075A4X9	Uncharacterized protein.	Uncharacterized protein.	0.982
T265_02114	T265_03322	A0A074ZXE5	A0A074ZWC3	Uncharacterized protein.	Uncharacterized protein.	0.584
T265_02114	T265_04794	A0A074ZXE5	A0A074ZYD7	Uncharacterized protein.	DEP domain-containing protein.	0.938
T265_02114	T265_04798	A0A074ZXE5	A0A074ZR91	Uncharacterized protein.	Uncharacterized protein.	0.938
T265_02114	T265_07027	A0A074ZXE5	A0A075ACQ2	Uncharacterized protein.	Uncharacterized protein.	0.990
T265_02114	T265_08500	A0A074ZXE5	A0A075A850	Uncharacterized protein.	Uncharacterized protein.	0.443
T265_02114	T265_08788	A0A074ZXE5	A0A075A784	Uncharacterized protein.	Uncharacterized protein.	0.979
T265_02114	T265_08849	A0A074ZXE5	A0A074Z813	Uncharacterized protein.	Uncharacterized protein.	0.851
T265_02114	T265_11589	A0A074ZXE5	A0A074Z2I4	Uncharacterized protein.	Uncharacterized protein.	0.971
T265_02114	T265_12366	A0A074ZXE5	A0A074YY59	Uncharacterized protein.	Uncharacterized protein.	0.851
T265_02114	T265_14328	A0A074ZXE5	A0A074ZCH1	Uncharacterized protein.	Uncharacterized protein.	0.973
T265_02114	T265_14534	A0A074ZXE5	A0A075A8R3	Uncharacterized protein.	Uncharacterized protein.	0.443
T265_02114	T265_14535	A0A074ZXE5	A0A074ZKK4	Uncharacterized protein.	Uncharacterized protein.	0.443