(10 nodes) Lipid droplet organization network (Opisthorchis viverrini)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_10934	Uncharacterized protein. (556 aa)
	T265_12231	Uncharacterized protein. (35 aa)
	T265_08865	Uncharacterized protein. (423 aa)
	T265_06840	Uncharacterized protein. (211 aa)
	T265_16172	Uncharacterized protein. (94 aa)
	T265_13575	Uncharacterized protein. (219 aa)
	T265_10885	Uncharacterized protein. (217 aa)
	T265_13523	Uncharacterized protein. (897 aa)
	T265_12683	Uncharacterized protein. (333 aa)
	T265_13018	Non-specific serine/threonine protein kinase. (751 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_06840	T265_12683	A0A074ZIZ8	A0A075A123	Uncharacterized protein.	Uncharacterized protein.	0.465
T265_08865	T265_10934	A0A074ZCA9	A0A074Z4T9	Uncharacterized protein.	Uncharacterized protein.	0.432
T265_08865	T265_12231	A0A074ZCA9	A0A074YV41	Uncharacterized protein.	Uncharacterized protein.	0.432
T265_08865	T265_16172	A0A074ZCA9	A0A074ZSN1	Uncharacterized protein.	Uncharacterized protein.	0.432
T265_10934	T265_08865	A0A074Z4T9	A0A074ZCA9	Uncharacterized protein.	Uncharacterized protein.	0.432
T265_12231	T265_08865	A0A074YV41	A0A074ZCA9	Uncharacterized protein.	Uncharacterized protein.	0.432
T265_12683	T265_06840	A0A075A123	A0A074ZIZ8	Uncharacterized protein.	Uncharacterized protein.	0.465
T265_16172	T265_08865	A0A074ZSN1	A0A074ZCA9	Uncharacterized protein.	Uncharacterized protein.	0.432