15 items (Opisthorchis viverrini) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_10584	Uncharacterized protein. (551 aa)
	T265_14018	Uncharacterized protein. (186 aa)
	T265_04901	TPR_REGION domain-containing protein. (370 aa)
	T265_13539	MYND-type domain-containing protein. (488 aa)
	T265_04774	Dynein assembly factor 1, axonemal homolog. (974 aa)
	T265_06615	Uncharacterized protein. (153 aa)
	T265_02503	Uncharacterized protein. (750 aa)
	T265_02407	Uncharacterized protein. (1410 aa)
	T265_12527	WD_REPEATS_REGION domain-containing protein. (695 aa)
	T265_02270	Uncharacterized protein. (231 aa)
	T265_00387	Uncharacterized protein. (1126 aa)
	T265_14126	Uncharacterized protein. (227 aa)
	T265_12487	Uncharacterized protein. (310 aa)
	T265_03187	WD_REPEATS_REGION domain-containing protein. (567 aa)
	T265_02269	Uncharacterized protein. (570 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_00387	T265_02407	A0A075AD09	A0A074ZZC3	Uncharacterized protein.	Uncharacterized protein.	0.511
T265_00387	T265_02503	A0A075AD09	A0A074ZYY6	Uncharacterized protein.	Uncharacterized protein.	0.697
T265_00387	T265_03187	A0A075AD09	A0A075AHR5	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.558
T265_00387	T265_04901	A0A075AD09	A0A074ZMD7	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.452
T265_00387	T265_06615	A0A075AD09	A0A074ZRR4	Uncharacterized protein.	Uncharacterized protein.	0.793
T265_00387	T265_10584	A0A075AD09	A0A074ZCR6	Uncharacterized protein.	Uncharacterized protein.	0.697
T265_00387	T265_12487	A0A075AD09	A0A075AD69	Uncharacterized protein.	Uncharacterized protein.	0.529
T265_00387	T265_13539	A0A075AD09	A0A074ZMJ8	Uncharacterized protein.	MYND-type domain-containing protein.	0.558
T265_00387	T265_14126	A0A075AD09	A0A075AD55	Uncharacterized protein.	Uncharacterized protein.	0.736
T265_02269	T265_02270	A0A075AIE6	A0A075A757	Uncharacterized protein.	Uncharacterized protein.	0.538
T265_02269	T265_02503	A0A075AIE6	A0A074ZYY6	Uncharacterized protein.	Uncharacterized protein.	0.472
T265_02269	T265_03187	A0A075AIE6	A0A075AHR5	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.520
T265_02269	T265_10584	A0A075AIE6	A0A074ZCR6	Uncharacterized protein.	Uncharacterized protein.	0.472
T265_02269	T265_13539	A0A075AIE6	A0A074ZMJ8	Uncharacterized protein.	MYND-type domain-containing protein.	0.451
T265_02270	T265_02269	A0A075A757	A0A075AIE6	Uncharacterized protein.	Uncharacterized protein.	0.538
T265_02270	T265_02503	A0A075A757	A0A074ZYY6	Uncharacterized protein.	Uncharacterized protein.	0.472
T265_02270	T265_03187	A0A075A757	A0A075AHR5	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.514
T265_02270	T265_10584	A0A075A757	A0A074ZCR6	Uncharacterized protein.	Uncharacterized protein.	0.472
T265_02270	T265_13539	A0A075A757	A0A074ZMJ8	Uncharacterized protein.	MYND-type domain-containing protein.	0.451
T265_02407	T265_00387	A0A074ZZC3	A0A075AD09	Uncharacterized protein.	Uncharacterized protein.	0.511