(35 nodes) Ribosome assembly network (Opisthorchis viverrini)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_09876	Tr-type G domain-containing protein. (1469 aa)
	T265_03813	Brix domain-containing protein. (363 aa)
	T265_00780	WD_REPEATS_REGION domain-containing protein. (1063 aa)
	T265_12865	Uncharacterized protein. (351 aa)
	T265_02103	PI3K/PI4K domain-containing protein. (4230 aa)
	T265_03714	Ribosomal_L23eN domain-containing protein. (200 aa)
	T265_03501	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (280 aa)
	T265_07529	Uncharacterized protein; Belongs to the peroxisomal membrane protein PXMP2/4 family. (254 aa)
	T265_04430	Uncharacterized protein. (233 aa)
	T265_06303	Uncharacterized protein. (204 aa)
	T265_11298	Uncharacterized protein. (75 aa)
	T265_12355	Uncharacterized protein. (72 aa)
	T265_10436	Uncharacterized protein. (300 aa)
	T265_15382	Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family. (197 aa)
	T265_15197	WD_REPEATS_REGION domain-containing protein. (677 aa)
	T265_05325	EF-hand domain-containing protein. (1565 aa)
	T265_00224	G domain-containing protein. (958 aa)
	T265_01179	Uncharacterized protein. (189 aa)
	T265_04495	Ku domain-containing protein. (974 aa)
	T265_06130	Ribosomal protein L6e. (246 aa)
	T265_00229	Uncharacterized protein. (590 aa)
	T265_07623	Uncharacterized protein. (163 aa)
	T265_06596	Uncharacterized protein. (1332 aa)
	T265_14631	PUA domain-containing protein. (249 aa)
	T265_08881	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family. (275 aa)
	T265_07530	Uncharacterized protein; Belongs to the peroxisomal membrane protein PXMP2/4 family. (236 aa)
	T265_09511	Uncharacterized protein. (624 aa)
	T265_14913	Uncharacterized protein. (254 aa)
	T265_11531	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (278 aa)
	T265_12898	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family. (764 aa)
	T265_02226	RRM domain-containing protein. (212 aa)
	T265_12975	Ribosomal_L16 domain-containing protein. (237 aa)
	T265_13051	Ribosomal_L18_c domain-containing protein. (298 aa)
	T265_00647	Uncharacterized protein. (64 aa)
	T265_09807	Uncharacterized protein. (340 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_00224	T265_00229	A0A075AJV4	A0A075AD76	G domain-containing protein.	Uncharacterized protein.	0.493
T265_00224	T265_01179	A0A075AJV4	A0A075AJ76	G domain-containing protein.	Uncharacterized protein.	0.890
T265_00224	T265_03501	A0A075AJV4	A0A074ZRG8	G domain-containing protein.	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	0.708
T265_00224	T265_11531	A0A075AJV4	A0A074Z971	G domain-containing protein.	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	0.493
T265_00224	T265_15382	A0A075AJV4	A0A074YZN4	G domain-containing protein.	Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family.	0.980
T265_00229	T265_00224	A0A075AD76	A0A075AJV4	Uncharacterized protein.	G domain-containing protein.	0.493
T265_00229	T265_00780	A0A075AD76	A0A075A1P6	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.573
T265_00229	T265_01179	A0A075AD76	A0A075AJ76	Uncharacterized protein.	Uncharacterized protein.	0.928
T265_00229	T265_03501	A0A075AD76	A0A074ZRG8	Uncharacterized protein.	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	0.999
T265_00229	T265_03714	A0A075AD76	A0A074ZV46	Uncharacterized protein.	Ribosomal_L23eN domain-containing protein.	0.999
T265_00229	T265_03813	A0A075AD76	A0A075A264	Uncharacterized protein.	Brix domain-containing protein.	0.925
T265_00229	T265_04430	A0A075AD76	A0A074ZN48	Uncharacterized protein.	Uncharacterized protein.	0.931
T265_00229	T265_05325	A0A075AD76	A0A074ZK60	Uncharacterized protein.	EF-hand domain-containing protein.	0.991
T265_00229	T265_06130	A0A075AD76	A0A075AEC8	Uncharacterized protein.	Ribosomal protein L6e.	0.999
T265_00229	T265_06303	A0A075AD76	A0A074ZKY6	Uncharacterized protein.	Uncharacterized protein.	0.934
T265_00229	T265_07623	A0A075AD76	A0A075AB23	Uncharacterized protein.	Uncharacterized protein.	0.989
T265_00229	T265_08881	A0A075AD76	A0A074ZC90	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	0.959
T265_00229	T265_09511	A0A075AD76	A0A074Z9Z4	Uncharacterized protein.	Uncharacterized protein.	0.841
T265_00229	T265_09807	A0A075AD76	A0A075A3N8	Uncharacterized protein.	Uncharacterized protein.	0.999
T265_00229	T265_09876	A0A075AD76	A0A075A3B2	Uncharacterized protein.	Tr-type G domain-containing protein.	0.671