(15 nodes) Alcohol catabolic process network (Opisthorchis viverrini)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_10261	Uncharacterized protein. (425 aa)
	T265_14953	IPPc domain-containing protein. (311 aa)
	T265_10180	Uncharacterized protein. (703 aa)
	T265_13808	Uncharacterized protein. (225 aa)
	T265_04718	Uncharacterized protein. (478 aa)
	T265_02631	Uncharacterized protein. (664 aa)
	T265_12544	Uncharacterized protein. (69 aa)
	T265_05093	IPPc domain-containing protein. (429 aa)
	T265_00449	Uncharacterized protein. (135 aa)
	T265_13416	Glycerol-3-phosphate dehydrogenase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family. (735 aa)
	T265_12543	Uncharacterized protein. (206 aa)
	T265_13046	SAC domain-containing protein. (1493 aa)
	T265_11435	S5A_REDUCTASE domain-containing protein. (255 aa)
	T265_01540	Uncharacterized protein. (332 aa)
	T265_11288	Rho-GAP domain-containing protein. (1174 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_00449	T265_13046	A0A075A344	A0A074ZVH8	Uncharacterized protein.	SAC domain-containing protein.	0.511
T265_00449	T265_14953	A0A075A344	A0A074Z4K4	Uncharacterized protein.	IPPc domain-containing protein.	0.400
T265_01540	T265_10261	A0A074ZZ05	A0A074Z339	Uncharacterized protein.	Uncharacterized protein.	0.913
T265_01540	T265_13808	A0A074ZZ05	A0A074ZJ61	Uncharacterized protein.	Uncharacterized protein.	0.589
T265_02631	T265_13416	A0A074ZUB8	A0A075AH15	Uncharacterized protein.	Glycerol-3-phosphate dehydrogenase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.	0.953
T265_04718	T265_10261	A0A074ZRP0	A0A074Z339	Uncharacterized protein.	Uncharacterized protein.	0.903
T265_04718	T265_13808	A0A074ZRP0	A0A074ZJ61	Uncharacterized protein.	Uncharacterized protein.	0.960
T265_04718	T265_14953	A0A074ZRP0	A0A074Z4K4	Uncharacterized protein.	IPPc domain-containing protein.	0.925
T265_05093	T265_11288	A0A075AFN8	A0A074YZ68	IPPc domain-containing protein.	Rho-GAP domain-containing protein.	0.917
T265_05093	T265_13046	A0A075AFN8	A0A074ZVH8	IPPc domain-containing protein.	SAC domain-containing protein.	0.949
T265_05093	T265_14953	A0A075AFN8	A0A074Z4K4	IPPc domain-containing protein.	IPPc domain-containing protein.	0.653
T265_10180	T265_13416	A0A074Z7F4	A0A075AH15	Uncharacterized protein.	Glycerol-3-phosphate dehydrogenase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.	0.924
T265_10261	T265_01540	A0A074Z339	A0A074ZZ05	Uncharacterized protein.	Uncharacterized protein.	0.913
T265_10261	T265_04718	A0A074Z339	A0A074ZRP0	Uncharacterized protein.	Uncharacterized protein.	0.903
T265_10261	T265_13808	A0A074Z339	A0A074ZJ61	Uncharacterized protein.	Uncharacterized protein.	0.967
T265_11288	T265_05093	A0A074YZ68	A0A075AFN8	Rho-GAP domain-containing protein.	IPPc domain-containing protein.	0.917
T265_11288	T265_13046	A0A074YZ68	A0A074ZVH8	Rho-GAP domain-containing protein.	SAC domain-containing protein.	0.967
T265_11288	T265_14953	A0A074YZ68	A0A074Z4K4	Rho-GAP domain-containing protein.	IPPc domain-containing protein.	0.575
T265_12543	T265_13046	A0A075A237	A0A074ZVH8	Uncharacterized protein.	SAC domain-containing protein.	0.511
T265_12543	T265_14953	A0A075A237	A0A074Z4K4	Uncharacterized protein.	IPPc domain-containing protein.	0.400