21 items (Opisthorchis viverrini) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_03936	Uncharacterized protein. (273 aa)
	T265_15846	Uncharacterized protein. (80 aa)
	T265_10401	Ferritin; Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation. Belongs to the ferritin family. (146 aa)
	T265_14980	Uncharacterized protein. (523 aa)
	T265_14872	Uncharacterized protein. (491 aa)
	T265_08873	Uncharacterized protein. (595 aa)
	T265_09068	Uncharacterized protein. (467 aa)
	T265_08889	Uncharacterized protein. (84 aa)
	T265_07662	Uncharacterized protein. (155 aa)
	T265_08460	Uncharacterized protein. (128 aa)
	T265_13632	Uncharacterized protein. (684 aa)
	T265_05781	Uncharacterized protein. (1837 aa)
	T265_03829	Uncharacterized protein. (1127 aa)
	T265_00710	Uncharacterized protein. (228 aa)
	T265_12440	Ferritin; Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation. Belongs to the ferritin family. (173 aa)
	T265_00124	Ferritin; Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation. Belongs to the ferritin family. (187 aa)
	T265_00749	Uncharacterized protein. (260 aa)
	T265_02972	Uncharacterized protein. (568 aa)
	T265_02209	Uncharacterized protein. (646 aa)
	T265_02273	NifU_N domain-containing protein. (227 aa)
	T265_06678	Metal cation transporter, ZIP family. (412 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_00124	T265_07662	A0A075AK01	A0A074ZGJ6	Ferritin; Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation. Belongs to the ferritin family.	Uncharacterized protein.	0.401
T265_00710	T265_00749	A0A075AJH5	A0A075AC41	Uncharacterized protein.	Uncharacterized protein.	0.532
T265_00710	T265_02209	A0A075AJH5	A0A074ZWS0	Uncharacterized protein.	Uncharacterized protein.	0.512
T265_00710	T265_05781	A0A075AJH5	A0A074ZMU3	Uncharacterized protein.	Uncharacterized protein.	0.688
T265_00749	T265_00710	A0A075AC41	A0A075AJH5	Uncharacterized protein.	Uncharacterized protein.	0.532
T265_00749	T265_05781	A0A075AC41	A0A074ZMU3	Uncharacterized protein.	Uncharacterized protein.	0.667
T265_02209	T265_00710	A0A074ZWS0	A0A075AJH5	Uncharacterized protein.	Uncharacterized protein.	0.512
T265_02209	T265_03936	A0A074ZWS0	A0A075A1N5	Uncharacterized protein.	Uncharacterized protein.	0.590
T265_02209	T265_05781	A0A074ZWS0	A0A074ZMU3	Uncharacterized protein.	Uncharacterized protein.	0.697
T265_02209	T265_06678	A0A074ZWS0	A0A074ZRK9	Uncharacterized protein.	Metal cation transporter, ZIP family.	0.621
T265_02209	T265_08460	A0A074ZWS0	A0A074ZK25	Uncharacterized protein.	Uncharacterized protein.	0.408
T265_02209	T265_08873	A0A074ZWS0	A0A074Z7X1	Uncharacterized protein.	Uncharacterized protein.	0.408
T265_02209	T265_13632	A0A074ZWS0	A0A074ZLG5	Uncharacterized protein.	Uncharacterized protein.	0.408
T265_02209	T265_14872	A0A074ZWS0	A0A074Z5G3	Uncharacterized protein.	Uncharacterized protein.	0.559
T265_02209	T265_14980	A0A074ZWS0	A0A074Z4A9	Uncharacterized protein.	Uncharacterized protein.	0.532
T265_02273	T265_02972	A0A074ZVJ9	A0A074ZXG3	NifU_N domain-containing protein.	Uncharacterized protein.	0.713
T265_02273	T265_03829	A0A074ZVJ9	A0A074ZRA1	NifU_N domain-containing protein.	Uncharacterized protein.	0.653
T265_02273	T265_07662	A0A074ZVJ9	A0A074ZGJ6	NifU_N domain-containing protein.	Uncharacterized protein.	0.998
T265_02273	T265_08889	A0A074ZVJ9	A0A074ZC67	NifU_N domain-containing protein.	Uncharacterized protein.	0.515
T265_02972	T265_02273	A0A074ZXG3	A0A074ZVJ9	Uncharacterized protein.	NifU_N domain-containing protein.	0.713