(27 nodes) Synapse organization network (Opisthorchis viverrini)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_04328	Uncharacterized protein. (1796 aa)
	T265_15900	PDZ domain-containing protein. (162 aa)
	T265_13171	Uncharacterized protein. (439 aa)
	T265_04969	Uncharacterized protein. (738 aa)
	T265_04619	Uncharacterized protein. (452 aa)
	T265_04273	Uncharacterized protein. (2443 aa)
	T265_13369	Uncharacterized protein. (429 aa)
	T265_01854	ANK_REP_REGION domain-containing protein. (1002 aa)
	T265_00438	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (459 aa)
	T265_00175	Uncharacterized protein. (1063 aa)
	T265_07174	Uncharacterized protein. (483 aa)
	T265_14218	Uncharacterized protein. (1980 aa)
	T265_13875	Uncharacterized protein. (1619 aa)
	T265_03670	Uncharacterized protein. (608 aa)
	T265_11175	Reverse transcriptase domain-containing protein. (979 aa)
	T265_08424	Uncharacterized protein. (1213 aa)
	T265_14217	Uncharacterized protein. (206 aa)
	T265_10249	Uncharacterized protein. (1890 aa)
	T265_06409	WH2 domain-containing protein. (199 aa)
	T265_06179	Uncharacterized protein. (433 aa)
	T265_06277	Uncharacterized protein. (420 aa)
	T265_08644	Uncharacterized protein. (1319 aa)
	T265_04621	Uncharacterized protein. (1186 aa)
	T265_04153	Ig-like domain-containing protein. (259 aa)
	T265_03351	Uncharacterized protein. (1660 aa)
	T265_03134	Uncharacterized protein. (2115 aa)
	T265_16098	Uncharacterized protein. (120 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_00175	T265_03351	A0A075A3L7	A0A074ZS29	Uncharacterized protein.	Uncharacterized protein.	0.837
T265_00175	T265_10249	A0A075A3L7	A0A074ZE04	Uncharacterized protein.	Uncharacterized protein.	0.837
T265_03134	T265_03351	A0A074ZSJ8	A0A074ZS29	Uncharacterized protein.	Uncharacterized protein.	0.524
T265_03134	T265_10249	A0A074ZSJ8	A0A074ZE04	Uncharacterized protein.	Uncharacterized protein.	0.524
T265_03351	T265_00175	A0A074ZS29	A0A075A3L7	Uncharacterized protein.	Uncharacterized protein.	0.837
T265_03351	T265_03134	A0A074ZS29	A0A074ZSJ8	Uncharacterized protein.	Uncharacterized protein.	0.524
T265_03351	T265_04619	A0A074ZS29	A0A074ZZ30	Uncharacterized protein.	Uncharacterized protein.	0.511
T265_03351	T265_04621	A0A074ZS29	A0A074ZN79	Uncharacterized protein.	Uncharacterized protein.	0.511
T265_03351	T265_13171	A0A074ZS29	A0A074ZWV2	Uncharacterized protein.	Uncharacterized protein.	0.524
T265_03351	T265_14217	A0A074ZS29	A0A074ZE02	Uncharacterized protein.	Uncharacterized protein.	0.511
T265_03351	T265_14218	A0A074ZS29	A0A075ACE3	Uncharacterized protein.	Uncharacterized protein.	0.511
T265_03351	T265_16098	A0A074ZS29	A0A074ZSY0	Uncharacterized protein.	Uncharacterized protein.	0.511
T265_03670	T265_06409	A0A075AHE8	A0A074ZG78	Uncharacterized protein.	WH2 domain-containing protein.	0.453
T265_03670	T265_11175	A0A075AHE8	A0A074ZAI0	Uncharacterized protein.	Reverse transcriptase domain-containing protein.	0.453
T265_04619	T265_03351	A0A074ZZ30	A0A074ZS29	Uncharacterized protein.	Uncharacterized protein.	0.511
T265_04619	T265_04621	A0A074ZZ30	A0A074ZN79	Uncharacterized protein.	Uncharacterized protein.	0.899
T265_04619	T265_10249	A0A074ZZ30	A0A074ZE04	Uncharacterized protein.	Uncharacterized protein.	0.511
T265_04621	T265_03351	A0A074ZN79	A0A074ZS29	Uncharacterized protein.	Uncharacterized protein.	0.511
T265_04621	T265_04619	A0A074ZN79	A0A074ZZ30	Uncharacterized protein.	Uncharacterized protein.	0.899
T265_04621	T265_10249	A0A074ZN79	A0A074ZE04	Uncharacterized protein.	Uncharacterized protein.	0.511