22 items (Opisthorchis viverrini) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_06236	Uncharacterized protein. (82 aa)
	T265_05531	Uncharacterized protein. (1855 aa)
	T265_05114	C2 domain-containing protein. (366 aa)
	T265_06240	VWFA domain-containing protein. (487 aa)
	T265_07810	Uncharacterized protein. (583 aa)
	T265_04210	C2 domain-containing protein. (396 aa)
	T265_04788	Glycos_transf_1 domain-containing protein. (308 aa)
	T265_06235	C2 domain-containing protein. (86 aa)
	T265_13129	BZIP domain-containing protein. (943 aa)
	T265_15386	MAT1 domain-containing protein. (1203 aa)
	T265_01787	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (991 aa)
	T265_10125	Copine domain-containing protein. (314 aa)
	T265_09488	Uncharacterized protein. (226 aa)
	T265_09254	Uncharacterized protein. (5727 aa)
	T265_07983	Uncharacterized protein. (206 aa)
	T265_14336	ANK_REP_REGION domain-containing protein. (1731 aa)
	T265_03361	Uncharacterized protein. (2142 aa)
	T265_13018	Non-specific serine/threonine protein kinase. (751 aa)
	T265_12037	Glyco_trans_4-like_N domain-containing protein. (182 aa)
	T265_07350	Uncharacterized protein. (171 aa)
	T265_07802	Kinase; Belongs to the inositol phosphokinase (IPK) family. (453 aa)
	T265_15841	Uncharacterized protein. (235 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_04788	T265_12037	A0A074ZR84	A0A074Z0P4	Glycos_transf_1 domain-containing protein.	Glyco_trans_4-like_N domain-containing protein.	0.917
T265_06235	T265_06240	A0A074ZT06	A0A074ZL52	C2 domain-containing protein.	VWFA domain-containing protein.	0.620
T265_06235	T265_10125	A0A074ZT06	A0A075A2H8	C2 domain-containing protein.	Copine domain-containing protein.	0.439
T265_06240	T265_06235	A0A074ZL52	A0A074ZT06	VWFA domain-containing protein.	C2 domain-containing protein.	0.620
T265_09254	T265_15841	A0A075A5M8	A0A074YZX2	Uncharacterized protein.	Uncharacterized protein.	0.416
T265_10125	T265_06235	A0A075A2H8	A0A074ZT06	Copine domain-containing protein.	C2 domain-containing protein.	0.439
T265_12037	T265_04788	A0A074Z0P4	A0A074ZR84	Glyco_trans_4-like_N domain-containing protein.	Glycos_transf_1 domain-containing protein.	0.917
T265_15841	T265_09254	A0A074YZX2	A0A075A5M8	Uncharacterized protein.	Uncharacterized protein.	0.416