(53 nodes) Detection of stimulus network (Opisthorchis viverrini)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_15337	PKD_channel domain-containing protein. (707 aa)
	T265_10642	Uncharacterized protein. (347 aa)
	T265_15497	Uncharacterized protein. (218 aa)
	T265_11451	Uncharacterized protein. (288 aa)
	T265_14973	ANK_REP_REGION domain-containing protein. (198 aa)
	T265_14900	Uncharacterized protein. (154 aa)
	T265_08272	Uncharacterized protein. (108 aa)
	T265_08108	Uncharacterized protein. (576 aa)
	T265_07969	Uncharacterized protein. (358 aa)
	T265_08089	Uncharacterized protein. (161 aa)
	T265_14455	PKD_channel domain-containing protein. (803 aa)
	T265_07873	Piezo-type mechanosensitive ion channel component. (3481 aa)
	T265_10898	Ion_trans domain-containing protein. (411 aa)
	T265_09025	Uncharacterized protein. (239 aa)
	T265_07568	Uncharacterized protein. (1106 aa)
	T265_07318	Uncharacterized protein. (372 aa)
	T265_07252	DUF4817 domain-containing protein. (175 aa)
	T265_07050	ANK_REP_REGION domain-containing protein; Belongs to the transient receptor (TC 1.A.4) family. (431 aa)
	T265_09844	Ion_trans domain-containing protein. (362 aa)
	T265_06298	Uncharacterized protein. (182 aa)
	T265_13969	ANK_REP_REGION domain-containing protein. (1227 aa)
	T265_13874	Serine/threonine-protein phosphatase. (790 aa)
	T265_05079	DUF4817 domain-containing protein. (352 aa)
	T265_08094	zf-3CxxC domain-containing protein. (591 aa)
	T265_07851	Uncharacterized protein. (366 aa)
	T265_04946	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. (409 aa)
	T265_13638	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. Opsin subfamily. (503 aa)
	T265_06619	Uncharacterized protein. (289 aa)
	T265_13433	Serine/threonine-protein phosphatase. (595 aa)
	T265_13820	Reverse transcriptase domain-containing protein. (1316 aa)
	T265_15589	Alpha-carbonic anhydrase domain-containing protein. (235 aa)
	T265_11803	Uncharacterized protein. (304 aa)
	T265_02232	Uncharacterized protein. (262 aa)
	T265_01730	Uncharacterized protein. (376 aa)
	T265_02105	Uncharacterized protein. (1581 aa)
	T265_05040	Uncharacterized protein. (392 aa)
	T265_02788	Uncharacterized protein. (326 aa)
	T265_10897	Uncharacterized protein. (959 aa)
	T265_10860	FZ domain-containing protein; Belongs to the G-protein coupled receptor Fz/Smo family. (1980 aa)
	T265_03881	Reverse transcriptase domain-containing protein. (1089 aa)
	T265_14974	Uncharacterized protein. (463 aa)
	T265_09379	Uncharacterized protein. (214 aa)
	T265_09314	DUF5641 domain-containing protein. (162 aa)
	T265_08977	Uncharacterized protein; Belongs to the transient receptor (TC 1.A.4) family. (1941 aa)
	T265_08867	ANK_REP_REGION domain-containing protein; Belongs to the transient receptor (TC 1.A.4) family. (1167 aa)
	T265_12925	Uncharacterized protein. (1952 aa)
	T265_14509	ANK_REP_REGION domain-containing protein. (1024 aa)
	T265_00922	Uncharacterized protein. (202 aa)
	T265_12593	G_PROTEIN_RECEP_F1_2 domain-containing protein. (352 aa)
	T265_05193	Uncharacterized protein. (143 aa)
	T265_13163	Uncharacterized protein. (308 aa)
	T265_02771	DUF5641 domain-containing protein. (176 aa)
	T265_01906	Uncharacterized protein. (226 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_02105	T265_15337	A0A074ZXD6	A0A074YZX9	Uncharacterized protein.	PKD_channel domain-containing protein.	0.848
T265_02771	T265_06298	A0A075AI39	A0A074ZGN0	DUF5641 domain-containing protein.	Uncharacterized protein.	0.501
T265_02771	T265_07318	A0A075AI39	A0A074ZDB4	DUF5641 domain-containing protein.	Uncharacterized protein.	0.518
T265_02771	T265_07568	A0A075AI39	A0A074ZCE8	DUF5641 domain-containing protein.	Uncharacterized protein.	0.521
T265_02771	T265_07851	A0A075AI39	A0A074ZM86	DUF5641 domain-containing protein.	Uncharacterized protein.	0.460
T265_02771	T265_08089	A0A075AI39	A0A074ZAS4	DUF5641 domain-containing protein.	Uncharacterized protein.	0.449
T265_02771	T265_11451	A0A075AI39	A0A074Z2Y4	DUF5641 domain-containing protein.	Uncharacterized protein.	0.521
T265_02771	T265_11803	A0A075AI39	A0A074ZW46	DUF5641 domain-containing protein.	Uncharacterized protein.	0.503
T265_02771	T265_13163	A0A075AI39	A0A075AHT6	DUF5641 domain-containing protein.	Uncharacterized protein.	0.515
T265_05040	T265_06298	A0A074ZXJ0	A0A074ZGN0	Uncharacterized protein.	Uncharacterized protein.	0.526
T265_05040	T265_07318	A0A074ZXJ0	A0A074ZDB4	Uncharacterized protein.	Uncharacterized protein.	0.531
T265_05040	T265_07568	A0A074ZXJ0	A0A074ZCE8	Uncharacterized protein.	Uncharacterized protein.	0.531
T265_05040	T265_07851	A0A074ZXJ0	A0A074ZM86	Uncharacterized protein.	Uncharacterized protein.	0.469
T265_05040	T265_08089	A0A074ZXJ0	A0A074ZAS4	Uncharacterized protein.	Uncharacterized protein.	0.488
T265_05040	T265_09025	A0A074ZXJ0	A0A074ZBN4	Uncharacterized protein.	Uncharacterized protein.	0.501
T265_05040	T265_09314	A0A074ZXJ0	A0A075A5J2	Uncharacterized protein.	DUF5641 domain-containing protein.	0.439
T265_05040	T265_10642	A0A074ZXJ0	A0A074Z1N2	Uncharacterized protein.	Uncharacterized protein.	0.402
T265_05040	T265_11451	A0A074ZXJ0	A0A074Z2Y4	Uncharacterized protein.	Uncharacterized protein.	0.535
T265_05040	T265_11803	A0A074ZXJ0	A0A074ZW46	Uncharacterized protein.	Uncharacterized protein.	0.521
T265_05040	T265_13163	A0A074ZXJ0	A0A075AHT6	Uncharacterized protein.	Uncharacterized protein.	0.532