41 items (Opisthorchis viverrini) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_07750	PA domain-containing protein. (205 aa)
	T265_03644	Uncharacterized protein. (320 aa)
	T265_04294	PDZ domain-containing protein. (170 aa)
	T265_02869	Uncharacterized protein. (905 aa)
	T265_12946	Uncharacterized protein. (266 aa)
	T265_02206	Uncharacterized protein. (1757 aa)
	T265_02223	Tetraspanin. (225 aa)
	T265_10860	FZ domain-containing protein; Belongs to the G-protein coupled receptor Fz/Smo family. (1980 aa)
	T265_00632	Homeobox domain-containing protein. (519 aa)
	T265_00639	MADS-box domain-containing protein. (725 aa)
	T265_10134	WD_REPEATS_REGION domain-containing protein. (502 aa)
	T265_14910	Homeobox domain-containing protein. (536 aa)
	T265_03099	Ig-like domain-containing protein. (213 aa)
	T265_03109	Uncharacterized protein. (4297 aa)
	T265_12695	LIM domain protein. (316 aa)
	T265_00149	C2H2-type domain-containing protein. (625 aa)
	T265_02193	TGc domain-containing protein. (1282 aa)
	T265_02141	Uncharacterized protein. (449 aa)
	T265_01893	Uncharacterized protein. (152 aa)
	T265_01789	Homeobox domain-containing protein. (591 aa)
	T265_00953	Helix-loop-helix DNA-binding domain protein. (366 aa)
	T265_01462	Uncharacterized protein. (532 aa)
	T265_04518	Uncharacterized protein. (3031 aa)
	T265_06453	HP domain-containing protein. (2398 aa)
	T265_07450	Zinc finger, C2H2 type. (518 aa)
	T265_07052	MADS-box domain-containing protein. (489 aa)
	T265_08418	TPR_REGION domain-containing protein. (996 aa)
	T265_13687	Uncharacterized protein. (294 aa)
	T265_07818	Uncharacterized protein. (357 aa)
	T265_14136	Uncharacterized protein. (329 aa)
	T265_11719	Uncharacterized protein. (735 aa)
	T265_16180	Ig-like domain-containing protein. (115 aa)
	T265_15988	Uncharacterized protein. (106 aa)
	T265_15239	VPS10 domain-containing protein. (685 aa)
	T265_10140	BHLH domain-containing protein. (381 aa)
	T265_15348	SAP domain-containing protein. (1653 aa)
	T265_12242	Fibronectin type-III domain-containing protein. (179 aa)
	T265_08561	BHLH domain-containing protein. (311 aa)
	T265_08225	BZIP domain-containing protein. (216 aa)
	T265_10641	Tetraspanin. (252 aa)
	T265_10284	Uncharacterized protein. (302 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_00639	T265_07052	A0A075A1B6	A0A074ZI58	MADS-box domain-containing protein.	MADS-box domain-containing protein.	0.572
T265_00639	T265_10140	A0A075A1B6	A0A074Z3H4	MADS-box domain-containing protein.	BHLH domain-containing protein.	0.731
T265_00953	T265_07052	A0A075AJA6	A0A074ZI58	Helix-loop-helix DNA-binding domain protein.	MADS-box domain-containing protein.	0.475
T265_02141	T265_02869	A0A075AIH2	A0A074ZTG1	Uncharacterized protein.	Uncharacterized protein.	0.810
T265_02141	T265_07818	A0A075AIH2	A0A074ZMG1	Uncharacterized protein.	Uncharacterized protein.	0.496
T265_02206	T265_02869	A0A074ZVR8	A0A074ZTG1	Uncharacterized protein.	Uncharacterized protein.	0.413
T265_02869	T265_02141	A0A074ZTG1	A0A075AIH2	Uncharacterized protein.	Uncharacterized protein.	0.810
T265_02869	T265_02206	A0A074ZTG1	A0A074ZVR8	Uncharacterized protein.	Uncharacterized protein.	0.413
T265_02869	T265_04294	A0A074ZTG1	A0A074ZT40	Uncharacterized protein.	PDZ domain-containing protein.	0.427
T265_02869	T265_07818	A0A074ZTG1	A0A074ZMG1	Uncharacterized protein.	Uncharacterized protein.	0.799
T265_02869	T265_12242	A0A074ZTG1	A0A074Z5E2	Uncharacterized protein.	Fibronectin type-III domain-containing protein.	0.516
T265_02869	T265_12695	A0A074ZTG1	A0A075ABC6	Uncharacterized protein.	LIM domain protein.	0.550
T265_02869	T265_14136	A0A074ZTG1	A0A074ZF57	Uncharacterized protein.	Uncharacterized protein.	0.907
T265_03099	T265_12242	A0A075A4H7	A0A074Z5E2	Ig-like domain-containing protein.	Fibronectin type-III domain-containing protein.	0.438
T265_03109	T265_12242	A0A075A4I3	A0A074Z5E2	Uncharacterized protein.	Fibronectin type-III domain-containing protein.	0.438
T265_04294	T265_02869	A0A074ZT40	A0A074ZTG1	PDZ domain-containing protein.	Uncharacterized protein.	0.427
T265_04294	T265_07818	A0A074ZT40	A0A074ZMG1	PDZ domain-containing protein.	Uncharacterized protein.	0.435
T265_07052	T265_00639	A0A074ZI58	A0A075A1B6	MADS-box domain-containing protein.	MADS-box domain-containing protein.	0.572
T265_07052	T265_00953	A0A074ZI58	A0A075AJA6	MADS-box domain-containing protein.	Helix-loop-helix DNA-binding domain protein.	0.475
T265_07052	T265_10140	A0A074ZI58	A0A074Z3H4	MADS-box domain-containing protein.	BHLH domain-containing protein.	0.492