9 items (Opisthorchis viverrini) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_07027	Uncharacterized protein. (3998 aa)
	T265_03756	Uncharacterized protein. (282 aa)
	T265_15308	Uncharacterized protein. (695 aa)
	T265_02114	Uncharacterized protein. (305 aa)
	T265_04176	AP-3 complex subunit delta; Belongs to the adaptor complexes large subunit family. (1203 aa)
	T265_13687	Uncharacterized protein. (294 aa)
	T265_07028	Uncharacterized protein. (460 aa)
	T265_09754	Transporter, major facilitator family protein. (493 aa)
	T265_15239	VPS10 domain-containing protein. (685 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_02114	T265_03756	A0A074ZXE5	A0A075A2B6	Uncharacterized protein.	Uncharacterized protein.	0.453
T265_02114	T265_07027	A0A074ZXE5	A0A075ACQ2	Uncharacterized protein.	Uncharacterized protein.	0.990
T265_02114	T265_15308	A0A074ZXE5	A0A074ZZ75	Uncharacterized protein.	Uncharacterized protein.	0.989
T265_03756	T265_02114	A0A075A2B6	A0A074ZXE5	Uncharacterized protein.	Uncharacterized protein.	0.453
T265_03756	T265_15308	A0A075A2B6	A0A074ZZ75	Uncharacterized protein.	Uncharacterized protein.	0.426
T265_07027	T265_02114	A0A075ACQ2	A0A074ZXE5	Uncharacterized protein.	Uncharacterized protein.	0.990
T265_07027	T265_15308	A0A075ACQ2	A0A074ZZ75	Uncharacterized protein.	Uncharacterized protein.	0.988
T265_13687	T265_15239	A0A074ZKW6	A0A074Z1F5	Uncharacterized protein.	VPS10 domain-containing protein.	0.426
T265_15239	T265_13687	A0A074Z1F5	A0A074ZKW6	VPS10 domain-containing protein.	Uncharacterized protein.	0.426
T265_15308	T265_02114	A0A074ZZ75	A0A074ZXE5	Uncharacterized protein.	Uncharacterized protein.	0.989
T265_15308	T265_03756	A0A074ZZ75	A0A075A2B6	Uncharacterized protein.	Uncharacterized protein.	0.426
T265_15308	T265_07027	A0A074ZZ75	A0A075ACQ2	Uncharacterized protein.	Uncharacterized protein.	0.988