(58 nodes) Protein modification by small protein removal network (Opisthorchis viverrini)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_00468	MPN domain-containing protein. (1771 aa)
	T265_01516	Ubiquitin carboxyl-terminal hydrolase. (744 aa)
	T265_01749	MINDY_DUB domain-containing protein. (526 aa)
	T265_02678	Josephin domain-containing protein. (304 aa)
	T265_02658	Uncharacterized protein. (78 aa)
	T265_13396	Ubiquitin carboxyl-terminal hydrolase. (899 aa)
	T265_04882	Ubiquitin carboxyl-terminal hydrolase. (446 aa)
	T265_14391	USP domain-containing protein. (1651 aa)
	T265_13069	USP domain-containing protein; Belongs to the peptidase C19 family. (665 aa)
	T265_00991	Uncharacterized protein; Belongs to the peptidase C19 family. (3911 aa)
	T265_10121	Mov34/MPN/PAD-1 family protein. (344 aa)
	T265_00326	Uncharacterized protein. (130 aa)
	T265_12610	Uncharacterized protein; Belongs to the peptidase C19 family. (1440 aa)
	T265_13365	PCI domain protein. (437 aa)
	T265_15143	DUF4205 domain-containing protein. (442 aa)
	T265_01798	Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...] (170 aa)
	T265_00599	Ubiquitin carboxyl-terminal hydrolase. (219 aa)
	T265_10736	DUF862 domain-containing protein. (505 aa)
	T265_10764	Uncharacterized protein. (658 aa)
	T265_11108	Ubiquitin carboxyl-terminal hydrolase. (635 aa)
	T265_04765	Ubiquitin carboxyl-terminal hydrolase. (835 aa)
	T265_01886	PCI domain protein. (445 aa)
	T265_13823	Uncharacterized protein. (210 aa)
	T265_02606	OTU domain-containing protein. (550 aa)
	T265_13853	Ubiquitin carboxyl-terminal hydrolase. (700 aa)
	T265_02499	Ubiquitin carboxyl-terminal hydrolase. (992 aa)
	T265_03303	MPN domain-containing protein. (431 aa)
	T265_08753	Uncharacterized protein. (430 aa)
	T265_12142	Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...] (98 aa)
	T265_09705	Uncharacterized protein. (374 aa)
	T265_10356	MATH domain protein; Belongs to the peptidase C19 family. (1437 aa)
	T265_11129	Uncharacterized protein. (418 aa)
	T265_11529	Uncharacterized protein. (95 aa)
	T265_11441	USP domain-containing protein; Belongs to the peptidase C19 family. (893 aa)
	T265_12115	OTU domain-containing protein. (270 aa)
	T265_07009	ULP_PROTEASE domain-containing protein. (217 aa)
	T265_03977	Uncharacterized protein. (730 aa)
	T265_05617	Uncharacterized protein. (1225 aa)
	T265_07566	WD_REPEATS_REGION domain-containing protein. (898 aa)
	T265_07767	Ubiquitin carboxyl-terminal hydrolase. (533 aa)
	T265_13624	C2H2-type domain-containing protein. (444 aa)
	T265_14511	CSN8_PSD8_EIF3K domain-containing protein. (211 aa)
	T265_08394	Ubiquitinyl hydrolase 1; Belongs to the peptidase C19 family. (528 aa)
	T265_06796	Ubiquitin carboxyl-terminal hydrolase. (444 aa)
	T265_14197	OTU domain-containing protein. (291 aa)
	T265_09054	ULP_PROTEASE domain-containing protein. (796 aa)
	T265_07459	UCH_C domain-containing protein. (110 aa)
	T265_07590	PCI domain-containing protein. (279 aa)
	T265_08979	ULP_PROTEASE domain-containing protein. (527 aa)
	T265_10841	USP domain-containing protein; Belongs to the peptidase C19 family. (3195 aa)
	T265_11122	zf-UBP_var domain-containing protein. (400 aa)
	T265_11109	Uncharacterized protein; Belongs to the peptidase C19 family. (420 aa)
	T265_11128	UCH domain-containing protein. (582 aa)
	T265_14512	Uncharacterized protein. (472 aa)
	T265_08464	Uncharacterized protein. (846 aa)
	T265_09870	Uncharacterized protein. (491 aa)
	T265_14640	Mov34/MPN/PAD-1 family protein. (404 aa)
	T265_11768	PCI domain-containing protein. (759 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_00326	T265_04882	A0A075A2D1	A0A075AFZ0	Uncharacterized protein.	Ubiquitin carboxyl-terminal hydrolase.	0.483
T265_00326	T265_05617	A0A075A2D1	A0A074ZNF3	Uncharacterized protein.	Uncharacterized protein.	0.483
T265_00326	T265_11441	A0A075A2D1	A0A074YYM6	Uncharacterized protein.	USP domain-containing protein; Belongs to the peptidase C19 family.	0.483
T265_00326	T265_11529	A0A075A2D1	A0A074YYP4	Uncharacterized protein.	Uncharacterized protein.	0.483
T265_00326	T265_13069	A0A075A2D1	A0A075A5V7	Uncharacterized protein.	USP domain-containing protein; Belongs to the peptidase C19 family.	0.483
T265_00326	T265_13624	A0A075A2D1	A0A074ZLJ1	Uncharacterized protein.	C2H2-type domain-containing protein.	0.483
T265_00326	T265_13823	A0A075A2D1	A0A074ZV98	Uncharacterized protein.	Uncharacterized protein.	0.483
T265_00468	T265_00599	A0A075AJQ7	A0A075A179	MPN domain-containing protein.	Ubiquitin carboxyl-terminal hydrolase.	0.766
T265_00468	T265_01886	A0A075AJQ7	A0A074ZXY0	MPN domain-containing protein.	PCI domain protein.	0.999
T265_00468	T265_03303	A0A075AJQ7	A0A074ZS62	MPN domain-containing protein.	MPN domain-containing protein.	0.662
T265_00468	T265_07009	A0A075AJQ7	A0A074ZQE1	MPN domain-containing protein.	ULP_PROTEASE domain-containing protein.	0.550
T265_00468	T265_07459	A0A075AJQ7	A0A074ZH44	MPN domain-containing protein.	UCH_C domain-containing protein.	0.666
T265_00468	T265_07566	A0A075AJQ7	A0A074ZNB8	MPN domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.520
T265_00468	T265_07590	A0A075AJQ7	A0A074ZGR8	MPN domain-containing protein.	PCI domain-containing protein.	0.986
T265_00468	T265_07767	A0A075AJQ7	A0A074ZMN9	MPN domain-containing protein.	Ubiquitin carboxyl-terminal hydrolase.	0.808
T265_00468	T265_10121	A0A075AJQ7	A0A075A2H1	MPN domain-containing protein.	Mov34/MPN/PAD-1 family protein.	0.998
T265_00468	T265_10764	A0A075AJQ7	A0A075A016	MPN domain-containing protein.	Uncharacterized protein.	0.715
T265_00468	T265_11768	A0A075AJQ7	A0A074Z8B2	MPN domain-containing protein.	PCI domain-containing protein.	0.999
T265_00468	T265_12115	A0A075AJQ7	A0A074YVT5	MPN domain-containing protein.	OTU domain-containing protein.	0.523
T265_00468	T265_13365	A0A075AJQ7	A0A075A1P9	MPN domain-containing protein.	PCI domain protein.	0.999