(6 nodes) Sin3-type complex network (Opisthorchis viverrini)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_04914	Sds3-like protein. (269 aa)
	T265_08686	HDAC_interact domain-containing protein. (1652 aa)
	T265_11362	Uncharacterized protein. (674 aa)
	T265_14676	PHD-type domain-containing protein. (755 aa)
	T265_14639	Uncharacterized protein. (1019 aa)
	T265_04036	Uncharacterized protein. (907 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_04036	T265_04914	A0A075A177	A0A074ZME5	Uncharacterized protein.	Sds3-like protein.	0.560
T265_04036	T265_08686	A0A075A177	A0A074Z875	Uncharacterized protein.	HDAC_interact domain-containing protein.	0.992
T265_04036	T265_14639	A0A075A177	A0A074ZJB5	Uncharacterized protein.	Uncharacterized protein.	0.691
T265_04914	T265_04036	A0A074ZME5	A0A075A177	Sds3-like protein.	Uncharacterized protein.	0.560
T265_04914	T265_08686	A0A074ZME5	A0A074Z875	Sds3-like protein.	HDAC_interact domain-containing protein.	0.942
T265_04914	T265_11362	A0A074ZME5	A0A074Z9S5	Sds3-like protein.	Uncharacterized protein.	0.484
T265_04914	T265_14639	A0A074ZME5	A0A074ZJB5	Sds3-like protein.	Uncharacterized protein.	0.620
T265_04914	T265_14676	A0A074ZME5	A0A074ZCE7	Sds3-like protein.	PHD-type domain-containing protein.	0.696
T265_08686	T265_04036	A0A074Z875	A0A075A177	HDAC_interact domain-containing protein.	Uncharacterized protein.	0.992
T265_08686	T265_04914	A0A074Z875	A0A074ZME5	HDAC_interact domain-containing protein.	Sds3-like protein.	0.942
T265_08686	T265_11362	A0A074Z875	A0A074Z9S5	HDAC_interact domain-containing protein.	Uncharacterized protein.	0.511
T265_08686	T265_14639	A0A074Z875	A0A074ZJB5	HDAC_interact domain-containing protein.	Uncharacterized protein.	0.995
T265_08686	T265_14676	A0A074Z875	A0A074ZCE7	HDAC_interact domain-containing protein.	PHD-type domain-containing protein.	0.741
T265_11362	T265_04914	A0A074Z9S5	A0A074ZME5	Uncharacterized protein.	Sds3-like protein.	0.484
T265_11362	T265_08686	A0A074Z9S5	A0A074Z875	Uncharacterized protein.	HDAC_interact domain-containing protein.	0.511
T265_11362	T265_14639	A0A074Z9S5	A0A074ZJB5	Uncharacterized protein.	Uncharacterized protein.	0.486
T265_11362	T265_14676	A0A074Z9S5	A0A074ZCE7	Uncharacterized protein.	PHD-type domain-containing protein.	0.554
T265_14639	T265_04036	A0A074ZJB5	A0A075A177	Uncharacterized protein.	Uncharacterized protein.	0.691
T265_14639	T265_04914	A0A074ZJB5	A0A074ZME5	Uncharacterized protein.	Sds3-like protein.	0.620
T265_14639	T265_08686	A0A074ZJB5	A0A074Z875	Uncharacterized protein.	HDAC_interact domain-containing protein.	0.995