32 items (Opisthorchis viverrini) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_06594	Uncharacterized protein. (818 aa)
	T265_04662	Sulfhydryl oxidase. (464 aa)
	T265_06590	Uncharacterized protein. (319 aa)
	T265_06595	Uncharacterized protein. (940 aa)
	T265_04181	Uncharacterized protein. (479 aa)
	T265_02588	TPR_MLP1_2 domain-containing protein. (2563 aa)
	T265_05447	Uncharacterized protein. (542 aa)
	T265_02940	PH domain-containing protein. (597 aa)
	T265_13100	Uncharacterized protein. (246 aa)
	T265_02630	AA_TRNA_LIGASE_II domain-containing protein. (1171 aa)
	T265_10451	Uncharacterized protein. (534 aa)
	T265_00368	Uncharacterized protein. (375 aa)
	T265_00497	Uncharacterized protein. (151 aa)
	T265_08746	TYR_PHOSPHATASE_2 domain-containing protein. (258 aa)
	T265_02113	WD_REPEATS_REGION domain-containing protein. (1360 aa)
	T265_12558	Protein kinase domain-containing protein. (1336 aa)
	T265_06781	Uncharacterized protein. (381 aa)
	T265_04495	Ku domain-containing protein. (974 aa)
	T265_12939	Uncharacterized protein. (300 aa)
	T265_01653	Uncharacterized protein. (418 aa)
	T265_14178	Endo/exonuclease/phosphatase domain-containing protein. (745 aa)
	T265_08394	Ubiquitinyl hydrolase 1; Belongs to the peptidase C19 family. (528 aa)
	T265_14846	UBIQUITIN_CONJUGAT_2 domain-containing protein. (102 aa)
	T265_14007	Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family. (523 aa)
	T265_08225	BZIP domain-containing protein. (216 aa)
	T265_15415	Uncharacterized protein. (254 aa)
	T265_14926	RHD domain-containing protein. (1381 aa)
	T265_08612	PDZ domain-containing protein. (376 aa)
	T265_08692	Uncharacterized protein. (3549 aa)
	T265_15267	UBIQUITIN_CONJUGAT_2 domain-containing protein. (192 aa)
	T265_15879	Uncharacterized protein. (127 aa)
	T265_15966	tRNA-synt_1c_C domain-containing protein. (90 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_00368	T265_02940	A0A075A2I5	A0A074ZXP4	Uncharacterized protein.	PH domain-containing protein.	0.721
T265_01653	T265_04181	A0A075AIU0	A0A074ZTC3	Uncharacterized protein.	Uncharacterized protein.	0.505
T265_02630	T265_14007	A0A074ZYK0	A0A074ZGG1	AA_TRNA_LIGASE_II domain-containing protein.	Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.	0.747
T265_02630	T265_15966	A0A074ZYK0	A0A074YUX0	AA_TRNA_LIGASE_II domain-containing protein.	tRNA-synt_1c_C domain-containing protein.	0.999
T265_02940	T265_00368	A0A074ZXP4	A0A075A2I5	PH domain-containing protein.	Uncharacterized protein.	0.721
T265_02940	T265_04181	A0A074ZXP4	A0A074ZTC3	PH domain-containing protein.	Uncharacterized protein.	0.721
T265_02940	T265_05447	A0A074ZXP4	A0A074ZW19	PH domain-containing protein.	Uncharacterized protein.	0.619
T265_02940	T265_06781	A0A074ZXP4	A0A074ZRA2	PH domain-containing protein.	Uncharacterized protein.	0.721
T265_02940	T265_08612	A0A074ZXP4	A0A074Z8S4	PH domain-containing protein.	PDZ domain-containing protein.	0.957
T265_04181	T265_01653	A0A074ZTC3	A0A075AIU0	Uncharacterized protein.	Uncharacterized protein.	0.505
T265_04181	T265_02940	A0A074ZTC3	A0A074ZXP4	Uncharacterized protein.	PH domain-containing protein.	0.721
T265_05447	T265_02940	A0A074ZW19	A0A074ZXP4	Uncharacterized protein.	PH domain-containing protein.	0.619
T265_06781	T265_02940	A0A074ZRA2	A0A074ZXP4	Uncharacterized protein.	PH domain-containing protein.	0.721
T265_08612	T265_02940	A0A074Z8S4	A0A074ZXP4	PDZ domain-containing protein.	PH domain-containing protein.	0.957
T265_14007	T265_02630	A0A074ZGG1	A0A074ZYK0	Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.	AA_TRNA_LIGASE_II domain-containing protein.	0.747
T265_14007	T265_15966	A0A074ZGG1	A0A074YUX0	Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.	tRNA-synt_1c_C domain-containing protein.	0.747
T265_14846	T265_15267	A0A074ZGU6	A0A074Z0Z8	UBIQUITIN_CONJUGAT_2 domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.989
T265_15267	T265_14846	A0A074Z0Z8	A0A074ZGU6	UBIQUITIN_CONJUGAT_2 domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.989
T265_15966	T265_02630	A0A074YUX0	A0A074ZYK0	tRNA-synt_1c_C domain-containing protein.	AA_TRNA_LIGASE_II domain-containing protein.	0.999
T265_15966	T265_14007	A0A074YUX0	A0A074ZGG1	tRNA-synt_1c_C domain-containing protein.	Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.	0.747