110 items (Opisthorchis viverrini) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_03264	Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family. (546 aa)
	T265_16148	Uncharacterized protein. (173 aa)
	T265_16072	Uncharacterized protein. (70 aa)
	T265_15901	Uncharacterized protein. (105 aa)
	T265_15770	Uncharacterized protein. (111 aa)
	T265_15709	Ig-like domain-containing protein. (359 aa)
	T265_11907	Uncharacterized protein. (260 aa)
	T265_11653	Uncharacterized protein. (403 aa)
	T265_16209	Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family. (52 aa)
	T265_11610	SEC63 domain-containing protein. (858 aa)
	T265_15429	Plug_translocon domain-containing protein. (500 aa)
	T265_10996	Uncharacterized protein. (1014 aa)
	T265_10613	ATPase, AAA family; Belongs to the AAA ATPase family. (486 aa)
	T265_11664	Uncharacterized protein. (456 aa)
	T265_10488	Reverse transcriptase domain-containing protein. (1935 aa)
	T265_10024	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (286 aa)
	T265_09997	Uncharacterized protein. (353 aa)
	T265_15008	FHA domain-containing protein. (796 aa)
	T265_16298	Uncharacterized protein. (122 aa)
	T265_15300	Uncharacterized protein. (171 aa)
	T265_10916	ATPase, AAA family; Belongs to the AAA ATPase family. (465 aa)
	T265_15899	Uncharacterized protein. (121 aa)
	T265_09171	Uncharacterized protein. (974 aa)
	T265_10336	Uncharacterized protein. (1463 aa)
	T265_08898	Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family. (576 aa)
	T265_14653	Uncharacterized protein. (220 aa)
	T265_11340	Uncharacterized protein; Belongs to the small Tim family. (139 aa)
	T265_08171	Uncharacterized protein. (161 aa)
	T265_15249	Uncharacterized protein. (727 aa)
	T265_08733	Uncharacterized protein. (161 aa)
	T265_07275	Uncharacterized protein. (202 aa)
	T265_08406	Uncharacterized protein. (559 aa)
	T265_08181	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (389 aa)
	T265_15041	Uncharacterized protein. (182 aa)
	T265_09699	Uncharacterized protein. (230 aa)
	SRP54	Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily. (518 aa)
	T265_06179	Uncharacterized protein. (433 aa)
	T265_06148	Phosphoprotein 3. (284 aa)
	T265_14779	Uncharacterized protein. (138 aa)
	T265_13899	WD_REPEATS_REGION domain-containing protein. (751 aa)
	T265_05888	TLC domain-containing protein. (298 aa)
	T265_05763	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting. (979 aa)
	T265_05511	Peptidase A2 domain-containing protein. (882 aa)
	T265_06274	Uncharacterized protein. (211 aa)
	T265_06277	Uncharacterized protein. (420 aa)
	T265_06289	Uncharacterized protein. (83 aa)
	T265_05159	PDZ domain-containing protein. (151 aa)
	T265_08094	zf-3CxxC domain-containing protein. (591 aa)
	T265_05880	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (668 aa)
	T265_04832	Reverse transcriptase domain-containing protein. (626 aa)
	T265_04766	SRP54 domain-containing protein. (803 aa)
	T265_04251	Flot domain-containing protein; Belongs to the band 7/mec-2 family. Flotillin subfamily. (367 aa)
	T265_04250	Tim10/DDP family zinc finger. (94 aa)
	T265_13686	PDZ domain-containing protein. (458 aa)
	T265_03809	GRASP55_65 domain-containing protein. (363 aa)
	T265_03393	Uncharacterized protein. (2314 aa)
	T265_16320	Uncharacterized protein. (96 aa)
	T265_03347	Uncharacterized protein. (665 aa)
	T265_04317	Uncharacterized protein. (412 aa)
	T265_04328	Uncharacterized protein. (1796 aa)
	T265_12290	Uncharacterized protein; Belongs to the SecY/SEC61-alpha family. (229 aa)
	T265_03194	Uncharacterized protein. (748 aa)
	T265_02820	Uncharacterized protein. (961 aa)
	T265_06057	PHB domain-containing protein; Belongs to the band 7/mec-2 family. Flotillin subfamily. (414 aa)
	T265_05991	EMC1_C domain-containing protein. (1035 aa)
	T265_15900	PDZ domain-containing protein. (162 aa)
	T265_15771	Uncharacterized protein. (345 aa)
	T265_13053	TPR_REGION domain-containing protein. (382 aa)
	T265_13830	Uncharacterized protein. (364 aa)
	T265_13044	SRP72 domain-containing protein. (660 aa)
	T265_15585	Uncharacterized protein. (222 aa)
	T265_05447	Uncharacterized protein. (542 aa)
	T265_01855	TPR_REGION domain-containing protein. (249 aa)
	T265_01942	Nup54 domain-containing protein. (591 aa)
	T265_11380	Uncharacterized protein. (1673 aa)
	T265_02769	Uncharacterized protein. (867 aa)
	T265_04812	Bac_surface_Ag domain-containing protein. (499 aa)
	T265_02470	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (447 aa)
	T265_10917	Uncharacterized protein. (1015 aa)
	T265_01164	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (448 aa)
	T265_12789	Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family. (430 aa)
	T265_12752	Uncharacterized protein. (330 aa)
	T265_04301	Uncharacterized protein. (180 aa)
	T265_10590	DAGKc domain-containing protein. (528 aa)
	T265_12658	Uncharacterized protein. (165 aa)
	T265_00438	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (459 aa)
	T265_15072	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (546 aa)
	T265_12792	Uncharacterized protein. (207 aa)
	T265_00613	Uncharacterized protein. (193 aa)
	T265_09190	ATPase ASNA1 homolog; ATPase required for the post-translational delivery of tail- anchored (TA) proteins to the endoplasmic reticulum. Recognizes and selectively binds the transmembrane domain of TA proteins in the cytosol. This complex then targets to the endoplasmic reticulum by membrane-bound receptors, where the tail-anchored protein is released for insertion. This process is regulated by ATP binding and hydrolysis. ATP binding drives the homodimer towards the closed dimer state, facilitating recognition of newly synthesized TA membrane proteins. ATP hydrolysis is required for ins [...] (348 aa)
	T265_09169	C2 domain protein. (75 aa)
	T265_01851	Uncharacterized protein. (911 aa)
	T265_08339	Reverse transcriptase domain-containing protein. (1674 aa)
	T265_01677	Uncharacterized protein. (223 aa)
	T265_07650	VPS37 C-terminal domain-containing protein. (91 aa)
	T265_00567	TPR_REGION domain-containing protein. (437 aa)
	T265_00020	Uncharacterized protein. (357 aa)
	T265_06637	Uncharacterized protein. (220 aa)
	T265_00132	Cation-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type V subfamily. (1140 aa)
	T265_05985	Uncharacterized protein. (511 aa)
	T265_05823	Uncharacterized protein. (438 aa)
	T265_05355	Uncharacterized protein. (694 aa)
	T265_04985	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (560 aa)
	T265_04405	Uncharacterized protein. (577 aa)
	T265_03670	Uncharacterized protein. (608 aa)
	T265_13215	Uncharacterized protein. (84 aa)
	T265_02770	Uncharacterized protein. (496 aa)
	T265_13033	NAC-A/B domain-containing protein. (206 aa)
	T265_01699	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (621 aa)
	T265_01331	Uncharacterized protein. (967 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SRP54	T265_00567	A0A074ZG59	A0A075ACN6	Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily.	TPR_REGION domain-containing protein.	0.540
SRP54	T265_03194	A0A074ZG59	A0A074ZTA6	Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily.	Uncharacterized protein.	0.999
SRP54	T265_04766	A0A074ZG59	A0A074ZMN6	Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily.	SRP54 domain-containing protein.	0.997
SRP54	T265_08171	A0A074ZG59	A0A074ZA01	Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily.	Uncharacterized protein.	0.584
SRP54	T265_09190	A0A074ZG59	A0A075A5S8	Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily.	ATPase ASNA1 homolog; ATPase required for the post-translational delivery of tail- anchored (TA) proteins to the endoplasmic reticulum. Recognizes and selectively binds the transmembrane domain of TA proteins in the cytosol. This complex then targets to the endoplasmic reticulum by membrane-bound receptors, where the tail-anchored protein is released for insertion. This process is regulated by ATP binding and hydrolysis. ATP binding drives the homodimer towards the closed dimer state, facilitating recognition of newly synthesized TA membrane proteins. ATP hydrolysis is required for ins [...]	0.628
SRP54	T265_11610	A0A074ZG59	A0A074YYG7	Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily.	SEC63 domain-containing protein.	0.706
SRP54	T265_11653	A0A074ZG59	A0A074YXW1	Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily.	Uncharacterized protein.	0.584
SRP54	T265_12290	A0A074ZG59	A0A074ZSY6	Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily.	Uncharacterized protein; Belongs to the SecY/SEC61-alpha family.	0.767
SRP54	T265_12752	A0A074ZG59	A0A075A0A3	Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily.	Uncharacterized protein.	0.505
SRP54	T265_13033	A0A074ZG59	A0A075AI92	Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily.	NAC-A/B domain-containing protein.	0.751
SRP54	T265_13044	A0A074ZG59	A0A074ZVH1	Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily.	SRP72 domain-containing protein.	0.999
SRP54	T265_13830	A0A074ZG59	A0A074ZV83	Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily.	Uncharacterized protein.	0.511
SRP54	T265_15429	A0A074ZG59	A0A074YZ28	Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily.	Plug_translocon domain-containing protein.	0.767
T265_00020	T265_01677	A0A075ADF1	A0A075A948	Uncharacterized protein.	Uncharacterized protein.	0.412
T265_00020	T265_04832	A0A075ADF1	A0A074ZMI4	Uncharacterized protein.	Reverse transcriptase domain-containing protein.	0.646
T265_00020	T265_05763	A0A075ADF1	A0A074ZJL4	Uncharacterized protein.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.415
T265_00020	T265_05823	A0A075ADF1	A0A075AEU2	Uncharacterized protein.	Uncharacterized protein.	0.567
T265_00020	T265_09699	A0A075ADF1	A0A074ZFW2	Uncharacterized protein.	Uncharacterized protein.	0.627
T265_00567	SRP54	A0A075ACN6	A0A074ZG59	TPR_REGION domain-containing protein.	Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily.	0.540
T265_00567	T265_02820	A0A075ACN6	A0A074ZTJ9	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.416