(63 nodes) Chromosomal region network (Opisthorchis viverrini)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_10609	G-patch domain-containing protein. (317 aa)
	T265_10444	CDT1 domain-containing protein. (680 aa)
	T265_09253	Uncharacterized protein. (1791 aa)
	T265_09759	Uncharacterized protein. (494 aa)
	T265_08193	Dynactin domain-containing protein. (1409 aa)
	T265_14481	G-patch domain-containing protein. (290 aa)
	T265_07721	Uncharacterized protein. (203 aa)
	T265_07429	Uncharacterized protein. (373 aa)
	T265_14261	BCNT-C domain-containing protein. (265 aa)
	T265_08194	CAP-Gly domain-containing protein. (203 aa)
	T265_07722	Protein kinase domain-containing protein. (793 aa)
	T265_07057	Uncharacterized protein. (202 aa)
	T265_08743	Uncharacterized protein. (1690 aa)
	T265_05767	WD_REPEATS_REGION domain-containing protein. (473 aa)
	T265_05422	Uncharacterized protein. (2193 aa)
	T265_14026	Uncharacterized protein. (228 aa)
	T265_05143	Uncharacterized protein. (536 aa)
	T265_04491	WD_REPEATS_REGION domain-containing protein. (362 aa)
	T265_04448	Uncharacterized protein. (242 aa)
	T265_07056	Uncharacterized protein. (1410 aa)
	T265_03805	Uncharacterized protein. (614 aa)
	T265_13669	Uncharacterized protein. (1058 aa)
	T265_16270	Uncharacterized protein. (59 aa)
	T265_02588	TPR_MLP1_2 domain-containing protein. (2563 aa)
	T265_01865	Uncharacterized protein. (487 aa)
	T265_13136	PHD-type domain-containing protein. (133 aa)
	T265_13665	Uncharacterized protein. (2634 aa)
	T265_13075	Uncharacterized protein. (1021 aa)
	T265_01410	SMC hinge domain-containing protein. (1598 aa)
	T265_00994	NUDE_C domain-containing protein. (276 aa)
	T265_01137	Uncharacterized protein. (359 aa)
	T265_12730	Uncharacterized protein. (962 aa)
	T265_10565	Uncharacterized protein. (298 aa)
	T265_01915	Uncharacterized protein. (709 aa)
	T265_00627	Chromo domain-containing protein. (307 aa)
	T265_00612	Uncharacterized protein. (1216 aa)
	T265_00630	Uncharacterized protein. (3231 aa)
	T265_00236	Uncharacterized protein. (697 aa)
	T265_01153	Uncharacterized protein. (373 aa)
	T265_03325	Peptidase S59 domain-containing protein. (2304 aa)
	T265_01035	DNA repair protein RAD51 homolog; Binds to single and double-stranded DNA and exhibits DNA- dependent ATPase activity. Underwinds duplex DNA. Belongs to the RecA family. RAD51 subfamily. (365 aa)
	T265_02955	Uncharacterized protein. (373 aa)
	T265_02792	Uncharacterized protein. (1619 aa)
	T265_01672	Uncharacterized protein. (215 aa)
	T265_12558	Protein kinase domain-containing protein. (1336 aa)
	T265_14099	UVR domain-containing protein. (1419 aa)
	T265_06410	53-BP1_Tudor domain-containing protein. (948 aa)
	T265_06122	NIBRIN_BRCT_II domain-containing protein. (720 aa)
	T265_13777	Uncharacterized protein. (530 aa)
	T265_13646	Uncharacterized protein. (714 aa)
	T265_13602	Rod_C domain-containing protein. (2308 aa)
	T265_04495	Ku domain-containing protein. (974 aa)
	T265_03161	Histone acetyltransferase subunit NuA4. (176 aa)
	T265_13166	Uncharacterized protein. (485 aa)
	T265_01155	Uncharacterized protein. (518 aa)
	T265_12454	Uncharacterized protein. (1304 aa)
	T265_15623	Telo_bind domain-containing protein. (725 aa)
	T265_15946	BRCT domain-containing protein. (135 aa)
	T265_15873	Telo_bind domain-containing protein. (110 aa)
	T265_10980	Uncharacterized protein. (1014 aa)
	T265_14970	Hat1_N domain-containing protein. (438 aa)
	T265_09614	SER_THR_PHOSPHATASE domain-containing protein. (92 aa)
	T265_09418	HORMA domain protein. (202 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_00236	T265_01035	A0A075A2W9	A0A075A3T3	Uncharacterized protein.	DNA repair protein RAD51 homolog; Binds to single and double-stranded DNA and exhibits DNA- dependent ATPase activity. Underwinds duplex DNA. Belongs to the RecA family. RAD51 subfamily.	0.427
T265_00236	T265_01410	A0A075A2W9	A0A074ZYJ3	Uncharacterized protein.	SMC hinge domain-containing protein.	0.681
T265_00236	T265_07721	A0A075A2W9	A0A074ZBM7	Uncharacterized protein.	Uncharacterized protein.	0.412
T265_00236	T265_07722	A0A075A2W9	A0A074ZGB2	Uncharacterized protein.	Protein kinase domain-containing protein.	0.412
T265_00236	T265_09418	A0A075A2W9	A0A074Z5W0	Uncharacterized protein.	HORMA domain protein.	0.565
T265_00236	T265_13602	A0A075A2W9	A0A075AG27	Uncharacterized protein.	Rod_C domain-containing protein.	0.499
T265_00612	T265_01035	A0A075A2A2	A0A075A3T3	Uncharacterized protein.	DNA repair protein RAD51 homolog; Binds to single and double-stranded DNA and exhibits DNA- dependent ATPase activity. Underwinds duplex DNA. Belongs to the RecA family. RAD51 subfamily.	0.963
T265_00612	T265_01410	A0A075A2A2	A0A074ZYJ3	Uncharacterized protein.	SMC hinge domain-containing protein.	0.454
T265_00612	T265_04495	A0A075A2A2	A0A075AGG9	Uncharacterized protein.	Ku domain-containing protein.	0.747
T265_00612	T265_06122	A0A075A2A2	A0A075AEG4	Uncharacterized protein.	NIBRIN_BRCT_II domain-containing protein.	0.671
T265_00612	T265_06410	A0A075A2A2	A0A075ADU6	Uncharacterized protein.	53-BP1_Tudor domain-containing protein.	0.645
T265_00612	T265_10444	A0A075A2A2	A0A074Z6K8	Uncharacterized protein.	CDT1 domain-containing protein.	0.708
T265_00612	T265_12454	A0A075A2A2	A0A075AJZ5	Uncharacterized protein.	Uncharacterized protein.	0.476
T265_00612	T265_14026	A0A075A2A2	A0A074ZKJ3	Uncharacterized protein.	Uncharacterized protein.	0.645
T265_00612	T265_15623	A0A075A2A2	A0A074YWQ5	Uncharacterized protein.	Telo_bind domain-containing protein.	0.522
T265_00612	T265_15873	A0A075A2A2	A0A074YZS7	Uncharacterized protein.	Telo_bind domain-containing protein.	0.522
T265_00612	T265_15946	A0A075A2A2	A0A074YZG2	Uncharacterized protein.	BRCT domain-containing protein.	0.645
T265_00627	T265_05767	A0A075A1A4	A0A074ZJL6	Chromo domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.565
T265_00627	T265_13777	A0A075A1A4	A0A075AF93	Chromo domain-containing protein.	Uncharacterized protein.	0.930
T265_00630	T265_01865	A0A075A2B9	A0A074ZWU2	Uncharacterized protein.	Uncharacterized protein.	0.526