(19 nodes) Cell cortex region network (Opisthorchis viverrini)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_14218	Uncharacterized protein. (1980 aa)
	T265_10497	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family. (167 aa)
	T265_14217	Uncharacterized protein. (206 aa)
	T265_13414	Uncharacterized protein. (1381 aa)
	T265_08194	CAP-Gly domain-containing protein. (203 aa)
	T265_06726	Uncharacterized protein. (641 aa)
	T265_04621	Uncharacterized protein. (1186 aa)
	T265_03134	Uncharacterized protein. (2115 aa)
	T265_16098	Uncharacterized protein. (120 aa)
	T265_16264	Uncharacterized protein. (126 aa)
	T265_16340	Uncharacterized protein. (89 aa)
	T265_09871	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family. (208 aa)
	T265_08193	Dynactin domain-containing protein. (1409 aa)
	T265_13171	Uncharacterized protein. (439 aa)
	T265_04619	Uncharacterized protein. (452 aa)
	T265_04273	Uncharacterized protein. (2443 aa)
	T265_15032	Uncharacterized protein. (790 aa)
	T265_02792	Uncharacterized protein. (1619 aa)
	T265_13588	PDZ domain-containing protein. (553 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_02792	T265_08193	A0A075A5H3	A0A074Z9Y6	Uncharacterized protein.	Dynactin domain-containing protein.	0.426
T265_02792	T265_08194	A0A075A5H3	A0A074ZEH1	Uncharacterized protein.	CAP-Gly domain-containing protein.	0.426
T265_03134	T265_13414	A0A074ZSJ8	A0A075AH13	Uncharacterized protein.	Uncharacterized protein.	0.914
T265_03134	T265_13588	A0A074ZSJ8	A0A074ZMT7	Uncharacterized protein.	PDZ domain-containing protein.	0.914
T265_04619	T265_04621	A0A074ZZ30	A0A074ZN79	Uncharacterized protein.	Uncharacterized protein.	0.899
T265_04619	T265_13414	A0A074ZZ30	A0A075AH13	Uncharacterized protein.	Uncharacterized protein.	0.994
T265_04619	T265_13588	A0A074ZZ30	A0A074ZMT7	Uncharacterized protein.	PDZ domain-containing protein.	0.994
T265_04621	T265_04619	A0A074ZN79	A0A074ZZ30	Uncharacterized protein.	Uncharacterized protein.	0.899
T265_04621	T265_13414	A0A074ZN79	A0A075AH13	Uncharacterized protein.	Uncharacterized protein.	0.994
T265_04621	T265_13588	A0A074ZN79	A0A074ZMT7	Uncharacterized protein.	PDZ domain-containing protein.	0.994
T265_08193	T265_02792	A0A074Z9Y6	A0A075A5H3	Dynactin domain-containing protein.	Uncharacterized protein.	0.426
T265_08194	T265_02792	A0A074ZEH1	A0A075A5H3	CAP-Gly domain-containing protein.	Uncharacterized protein.	0.426
T265_13171	T265_13414	A0A074ZWV2	A0A075AH13	Uncharacterized protein.	Uncharacterized protein.	0.914
T265_13171	T265_13588	A0A074ZWV2	A0A074ZMT7	Uncharacterized protein.	PDZ domain-containing protein.	0.914
T265_13414	T265_03134	A0A075AH13	A0A074ZSJ8	Uncharacterized protein.	Uncharacterized protein.	0.914
T265_13414	T265_04619	A0A075AH13	A0A074ZZ30	Uncharacterized protein.	Uncharacterized protein.	0.994
T265_13414	T265_04621	A0A075AH13	A0A074ZN79	Uncharacterized protein.	Uncharacterized protein.	0.994
T265_13414	T265_13171	A0A075AH13	A0A074ZWV2	Uncharacterized protein.	Uncharacterized protein.	0.914
T265_13414	T265_14217	A0A075AH13	A0A074ZE02	Uncharacterized protein.	Uncharacterized protein.	0.994
T265_13414	T265_14218	A0A075AH13	A0A075ACE3	Uncharacterized protein.	Uncharacterized protein.	0.994