50 items (Opisthorchis viverrini) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_06122	NIBRIN_BRCT_II domain-containing protein. (720 aa)
	T265_05545	Uncharacterized protein. (937 aa)
	T265_00701	Uncharacterized protein. (304 aa)
	T265_00173	Uncharacterized protein. (981 aa)
	T265_13633	Uncharacterized protein. (2907 aa)
	T265_13669	Uncharacterized protein. (1058 aa)
	T265_07241	UBX domain-containing protein. (483 aa)
	T265_04423	Uncharacterized protein. (942 aa)
	T265_07673	Uncharacterized protein. (1815 aa)
	T265_13894	Diacylglycerol kinase. (1360 aa)
	T265_04901	TPR_REGION domain-containing protein. (370 aa)
	T265_13953	ANK_REP_REGION domain-containing protein. (404 aa)
	T265_14026	Uncharacterized protein. (228 aa)
	T265_06786	Uncharacterized protein. (373 aa)
	T265_07052	MADS-box domain-containing protein. (489 aa)
	T265_14775	RWD domain-containing protein. (146 aa)
	T265_06498	Uncharacterized protein. (825 aa)
	T265_06461	ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. DDX54/DBP10 subfamily. (849 aa)
	T265_06726	Uncharacterized protein. (641 aa)
	T265_14759	Protein HIRA; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle; Belongs to the WD repeat HIR1 family. (1182 aa)
	T265_08806	TFIIS N-terminal domain-containing protein. (607 aa)
	T265_10336	Uncharacterized protein. (1463 aa)
	T265_10768	Uncharacterized protein. (3047 aa)
	T265_10935	Uncharacterized protein. (2749 aa)
	T265_15946	BRCT domain-containing protein. (135 aa)
	T265_15987	TMF_TATA_bd domain-containing protein. (103 aa)
	T265_16161	Uncharacterized protein. (141 aa)
	T265_06391	ETS domain-containing protein. (726 aa)
	T265_16019	Uncharacterized protein. (146 aa)
	T265_06111	RBR-type E3 ubiquitin transferase. (447 aa)
	T265_13053	TPR_REGION domain-containing protein. (382 aa)
	T265_01996	G10 protein. (144 aa)
	T265_02983	HMG box domain-containing protein. (1115 aa)
	T265_01519	Diacylglycerol kinase. (1321 aa)
	T265_03480	Nuclear receptor domain-containing protein. (905 aa)
	T265_04571	SANT domain-containing protein. (1401 aa)
	T265_15296	Uncharacterized protein. (1098 aa)
	T265_04478	LEDGF domain-containing protein. (1349 aa)
	T265_15219	Uncharacterized protein. (430 aa)
	T265_04203	Uncharacterized protein. (995 aa)
	T265_13402	Uncharacterized protein. (3209 aa)
	T265_03633	Uncharacterized protein. (713 aa)
	T265_13276	Uncharacterized protein. (1630 aa)
	T265_13267	Uncharacterized protein. (434 aa)
	T265_00543	Uncharacterized protein. (476 aa)
	T265_09027	THAP-type domain-containing protein. (876 aa)
	T265_12438	Uncharacterized protein. (889 aa)
	T265_01480	NIF3-like protein 1; Belongs to the GTP cyclohydrolase I type 2/NIF3 family. (359 aa)
	T265_00546	Uncharacterized protein. (421 aa)
	T265_06410	53-BP1_Tudor domain-containing protein. (948 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_00173	T265_04901	A0A075AJT9	A0A074ZMD7	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.660
T265_00173	T265_13053	A0A075AJT9	A0A074ZUN8	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.975
T265_00173	T265_15296	A0A075AJT9	A0A074ZZC8	Uncharacterized protein.	Uncharacterized protein.	0.988
T265_01519	T265_13894	A0A074ZYC7	A0A074ZMG4	Diacylglycerol kinase.	Diacylglycerol kinase.	0.908
T265_01996	T265_05545	A0A074ZWS5	A0A075AF49	G10 protein.	Uncharacterized protein.	0.415
T265_02983	T265_04571	A0A074ZXH8	A0A074ZZ86	HMG box domain-containing protein.	SANT domain-containing protein.	0.400
T265_03480	T265_04571	A0A074ZRE9	A0A074ZZ86	Nuclear receptor domain-containing protein.	SANT domain-containing protein.	0.611
T265_03633	T265_13633	A0A075A2P9	A0A074ZQU8	Uncharacterized protein.	Uncharacterized protein.	0.913
T265_04203	T265_06726	A0A075A0R1	A0A074ZF55	Uncharacterized protein.	Uncharacterized protein.	0.817
T265_04203	T265_09027	A0A075A0R1	A0A075A6B2	Uncharacterized protein.	THAP-type domain-containing protein.	0.511
T265_04423	T265_15987	A0A074ZNX8	A0A074YV29	Uncharacterized protein.	TMF_TATA_bd domain-containing protein.	0.430
T265_04571	T265_02983	A0A074ZZ86	A0A074ZXH8	SANT domain-containing protein.	HMG box domain-containing protein.	0.400
T265_04571	T265_03480	A0A074ZZ86	A0A074ZRE9	SANT domain-containing protein.	Nuclear receptor domain-containing protein.	0.611
T265_04571	T265_06726	A0A074ZZ86	A0A074ZF55	SANT domain-containing protein.	Uncharacterized protein.	0.536
T265_04571	T265_10768	A0A074ZZ86	A0A074Z5E5	SANT domain-containing protein.	Uncharacterized protein.	0.491
T265_04571	T265_13267	A0A074ZZ86	A0A075A345	SANT domain-containing protein.	Uncharacterized protein.	0.611
T265_04571	T265_13402	A0A074ZZ86	A0A075A187	SANT domain-containing protein.	Uncharacterized protein.	0.491
T265_04901	T265_00173	A0A074ZMD7	A0A075AJT9	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.660
T265_04901	T265_13053	A0A074ZMD7	A0A074ZUN8	TPR_REGION domain-containing protein.	TPR_REGION domain-containing protein.	0.692
T265_04901	T265_15296	A0A074ZMD7	A0A074ZZC8	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.535