7 items (Opisthorchis viverrini) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_13334	Uncharacterized protein. (687 aa)
	T265_11901	BZIP domain-containing protein. (914 aa)
	T265_09079	Uncharacterized protein. (676 aa)
	T265_09086	Uncharacterized protein. (583 aa)
	T265_09780	Uncharacterized protein. (857 aa)
	T265_08225	BZIP domain-containing protein. (216 aa)
	T265_03054	Apoptosis regulator protein, Bcl-2 family. (199 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_03054	T265_13334	A0A075A4S7	A0A074ZUR7	Apoptosis regulator protein, Bcl-2 family.	Uncharacterized protein.	0.703
T265_08225	T265_09780	A0A074Z9V0	A0A074Z8W0	BZIP domain-containing protein.	Uncharacterized protein.	0.669
T265_08225	T265_11901	A0A074Z9V0	A0A074YX94	BZIP domain-containing protein.	BZIP domain-containing protein.	0.837
T265_09780	T265_08225	A0A074Z8W0	A0A074Z9V0	Uncharacterized protein.	BZIP domain-containing protein.	0.669
T265_11901	T265_08225	A0A074YX94	A0A074Z9V0	BZIP domain-containing protein.	BZIP domain-containing protein.	0.837
T265_13334	T265_03054	A0A074ZUR7	A0A075A4S7	Uncharacterized protein.	Apoptosis regulator protein, Bcl-2 family.	0.703