6 items (Opisthorchis viverrini) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_10644	RING-type domain-containing protein. (812 aa)
	T265_15867	Uncharacterized protein. (123 aa)
	T265_08865	Uncharacterized protein. (423 aa)
	T265_06380	RDD domain-containing protein. (663 aa)
	T265_00286	Zinc finger, C3HC4 type. (560 aa)
	T265_05962	Uncharacterized protein. (722 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_00286	T265_05962	A0A075A672	A0A075AEN8	Zinc finger, C3HC4 type.	Uncharacterized protein.	0.895
T265_00286	T265_06380	A0A075A672	A0A074ZKM4	Zinc finger, C3HC4 type.	RDD domain-containing protein.	0.517
T265_00286	T265_08865	A0A075A672	A0A074ZCA9	Zinc finger, C3HC4 type.	Uncharacterized protein.	0.434
T265_00286	T265_10644	A0A075A672	A0A074Z1G5	Zinc finger, C3HC4 type.	RING-type domain-containing protein.	0.900
T265_05962	T265_00286	A0A075AEN8	A0A075A672	Uncharacterized protein.	Zinc finger, C3HC4 type.	0.895
T265_05962	T265_06380	A0A075AEN8	A0A074ZKM4	Uncharacterized protein.	RDD domain-containing protein.	0.530
T265_05962	T265_08865	A0A075AEN8	A0A074ZCA9	Uncharacterized protein.	Uncharacterized protein.	0.701
T265_05962	T265_10644	A0A075AEN8	A0A074Z1G5	Uncharacterized protein.	RING-type domain-containing protein.	0.895
T265_05962	T265_15867	A0A075AEN8	A0A074Z661	Uncharacterized protein.	Uncharacterized protein.	0.895
T265_06380	T265_00286	A0A074ZKM4	A0A075A672	RDD domain-containing protein.	Zinc finger, C3HC4 type.	0.517
T265_06380	T265_05962	A0A074ZKM4	A0A075AEN8	RDD domain-containing protein.	Uncharacterized protein.	0.530
T265_06380	T265_10644	A0A074ZKM4	A0A074Z1G5	RDD domain-containing protein.	RING-type domain-containing protein.	0.517
T265_06380	T265_15867	A0A074ZKM4	A0A074Z661	RDD domain-containing protein.	Uncharacterized protein.	0.517
T265_08865	T265_00286	A0A074ZCA9	A0A075A672	Uncharacterized protein.	Zinc finger, C3HC4 type.	0.434
T265_08865	T265_05962	A0A074ZCA9	A0A075AEN8	Uncharacterized protein.	Uncharacterized protein.	0.701
T265_08865	T265_10644	A0A074ZCA9	A0A074Z1G5	Uncharacterized protein.	RING-type domain-containing protein.	0.434
T265_08865	T265_15867	A0A074ZCA9	A0A074Z661	Uncharacterized protein.	Uncharacterized protein.	0.434
T265_10644	T265_00286	A0A074Z1G5	A0A075A672	RING-type domain-containing protein.	Zinc finger, C3HC4 type.	0.900
T265_10644	T265_05962	A0A074Z1G5	A0A075AEN8	RING-type domain-containing protein.	Uncharacterized protein.	0.895
T265_10644	T265_06380	A0A074Z1G5	A0A074ZKM4	RING-type domain-containing protein.	RDD domain-containing protein.	0.517