(23 nodes) Ruffle network (Opisthorchis viverrini)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_16072	Uncharacterized protein. (70 aa)
	T265_10372	SH3 domain-containing protein. (543 aa)
	T265_09738	SH3 domain-containing protein. (421 aa)
	T265_10701	F-BAR domain-containing protein. (538 aa)
	T265_09171	Uncharacterized protein. (974 aa)
	T265_14326	PTB domain-containing protein. (174 aa)
	T265_06746	Uncharacterized protein. (448 aa)
	T265_09737	Uncharacterized protein. (142 aa)
	T265_07582	SH3 domain-containing protein. (590 aa)
	T265_14779	Uncharacterized protein. (138 aa)
	T265_06747	Uncharacterized protein. (383 aa)
	T265_05098	FERM domain-containing protein. (2865 aa)
	T265_04735	Uncharacterized protein. (3425 aa)
	T265_02940	PH domain-containing protein. (597 aa)
	T265_04768	Uncharacterized protein. (1451 aa)
	T265_12543	Uncharacterized protein. (206 aa)
	T265_00449	Uncharacterized protein. (135 aa)
	T265_02871	Uncharacterized protein. (180 aa)
	T265_09169	C2 domain protein. (75 aa)
	T265_12544	Uncharacterized protein. (69 aa)
	T265_02870	Uncharacterized protein. (274 aa)
	T265_02060	LIM zinc-binding domain-containing protein. (425 aa)
	T265_12861	Uncharacterized protein. (494 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_00449	T265_02940	A0A075A344	A0A074ZXP4	Uncharacterized protein.	PH domain-containing protein.	0.627
T265_02940	T265_00449	A0A074ZXP4	A0A075A344	PH domain-containing protein.	Uncharacterized protein.	0.627
T265_02940	T265_12543	A0A074ZXP4	A0A075A237	PH domain-containing protein.	Uncharacterized protein.	0.627
T265_02940	T265_12544	A0A074ZXP4	A0A075ACS1	PH domain-containing protein.	Uncharacterized protein.	0.627
T265_07582	T265_14326	A0A074ZGR0	A0A074ZCG3	SH3 domain-containing protein.	PTB domain-containing protein.	0.415
T265_12543	T265_02940	A0A075A237	A0A074ZXP4	Uncharacterized protein.	PH domain-containing protein.	0.627
T265_12544	T265_02940	A0A075ACS1	A0A074ZXP4	Uncharacterized protein.	PH domain-containing protein.	0.627
T265_14326	T265_07582	A0A074ZCG3	A0A074ZGR0	PTB domain-containing protein.	SH3 domain-containing protein.	0.415
T265_14779	T265_16072	A0A074ZHR4	A0A074YUE6	Uncharacterized protein.	Uncharacterized protein.	0.449
T265_16072	T265_14779	A0A074YUE6	A0A074ZHR4	Uncharacterized protein.	Uncharacterized protein.	0.449