19 items (Opisthorchis viverrini) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_09908	Uncharacterized protein. (195 aa)
	T265_09225	Uncharacterized protein. (463 aa)
	T265_11688	Uncharacterized protein. (566 aa)
	T265_08200	HintN domain-containing protein. (667 aa)
	T265_09226	Uncharacterized protein. (332 aa)
	T265_09208	Ig-like domain-containing protein. (2256 aa)
	T265_14349	Sod_Cu domain-containing protein. (162 aa)
	T265_10833	GHMP_kinases_C domain-containing protein. (290 aa)
	T265_15015	Uncharacterized protein. (426 aa)
	T265_14350	Copper/zinc superoxide dismutase. (164 aa)
	T265_05750	TGF_BETA_2 domain-containing protein. (574 aa)
	T265_05641	Uncharacterized protein. (141 aa)
	T265_13959	Uncharacterized protein. (890 aa)
	T265_12837	Uncharacterized protein. (252 aa)
	T265_01626	Superoxide dismutase [Cu-Zn]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family. (218 aa)
	T265_12836	Uncharacterized protein. (136 aa)
	T265_08036	Uncharacterized protein. (3659 aa)
	T265_04313	Uncharacterized protein. (226 aa)
	T265_13054	TNase-like domain-containing protein. (546 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_08036	T265_09208	A0A075A9P7	A0A074ZB34	Uncharacterized protein.	Ig-like domain-containing protein.	0.658
T265_08036	T265_13959	A0A075A9P7	A0A074ZLI7	Uncharacterized protein.	Uncharacterized protein.	0.772
T265_09208	T265_08036	A0A074ZB34	A0A075A9P7	Ig-like domain-containing protein.	Uncharacterized protein.	0.658
T265_09225	T265_09226	A0A074Z6F7	A0A074ZB20	Uncharacterized protein.	Uncharacterized protein.	0.901
T265_09225	T265_15015	A0A074Z6F7	A0A074ZEX0	Uncharacterized protein.	Uncharacterized protein.	0.904
T265_09226	T265_09225	A0A074ZB20	A0A074Z6F7	Uncharacterized protein.	Uncharacterized protein.	0.901
T265_09226	T265_15015	A0A074ZB20	A0A074ZEX0	Uncharacterized protein.	Uncharacterized protein.	0.905
T265_13959	T265_08036	A0A074ZLI7	A0A075A9P7	Uncharacterized protein.	Uncharacterized protein.	0.772
T265_15015	T265_09225	A0A074ZEX0	A0A074Z6F7	Uncharacterized protein.	Uncharacterized protein.	0.904
T265_15015	T265_09226	A0A074ZEX0	A0A074ZB20	Uncharacterized protein.	Uncharacterized protein.	0.905