29 items (Opisthorchis viverrini) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_10096	Uncharacterized protein. (846 aa)
	T265_04955	Uncharacterized protein. (472 aa)
	T265_09804	SP-RING-type domain-containing protein. (946 aa)
	T265_06552	Uncharacterized protein. (396 aa)
	T265_06694	Uncharacterized protein. (76 aa)
	T265_06554	Uncharacterized protein. (514 aa)
	T265_13441	Uncharacterized protein. (230 aa)
	T265_02088	LITAF domain-containing protein. (139 aa)
	T265_03361	Uncharacterized protein. (2142 aa)
	T265_06313	Uncharacterized protein. (1113 aa)
	T265_03641	Sm domain-containing protein. (496 aa)
	T265_04431	FPL domain-containing protein. (1233 aa)
	T265_07078	Uncharacterized protein. (340 aa)
	T265_14336	ANK_REP_REGION domain-containing protein. (1731 aa)
	T265_03153	ATPase_AAA_core domain-containing protein. (804 aa)
	T265_00095	Uncharacterized protein. (259 aa)
	T265_06904	LITAF domain-containing protein. (203 aa)
	T265_07410	GRANULINS domain-containing protein. (162 aa)
	T265_03743	Uncharacterized protein. (281 aa)
	T265_04939	Ion_trans domain-containing protein. (778 aa)
	T265_15472	Uncharacterized protein. (178 aa)
	T265_11123	LITAF domain-containing protein. (94 aa)
	T265_15274	LITAF domain-containing protein. (159 aa)
	T265_10335	UBX domain-containing protein. (429 aa)
	T265_14960	Uncharacterized protein. (1017 aa)
	T265_14872	Uncharacterized protein. (491 aa)
	T265_09246	LITAF domain-containing protein. (93 aa)
	T265_09374	Uncharacterized protein. (625 aa)
	T265_15041	Uncharacterized protein. (182 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_00095	T265_15041	A0A075A3K4	A0A074ZEN4	Uncharacterized protein.	Uncharacterized protein.	0.468
T265_03641	T265_13441	A0A074ZR10	A0A075AGX9	Sm domain-containing protein.	Uncharacterized protein.	0.495
T265_03641	T265_15472	A0A074ZR10	A0A074YYH4	Sm domain-containing protein.	Uncharacterized protein.	0.495
T265_09804	T265_14960	A0A074ZFJ8	A0A074Z4J2	SP-RING-type domain-containing protein.	Uncharacterized protein.	0.444
T265_13441	T265_03641	A0A075AGX9	A0A074ZR10	Uncharacterized protein.	Sm domain-containing protein.	0.495
T265_13441	T265_15472	A0A075AGX9	A0A074YYH4	Uncharacterized protein.	Uncharacterized protein.	0.913
T265_14960	T265_09804	A0A074Z4J2	A0A074ZFJ8	Uncharacterized protein.	SP-RING-type domain-containing protein.	0.444
T265_15041	T265_00095	A0A074ZEN4	A0A075A3K4	Uncharacterized protein.	Uncharacterized protein.	0.468
T265_15472	T265_03641	A0A074YYH4	A0A074ZR10	Uncharacterized protein.	Sm domain-containing protein.	0.495
T265_15472	T265_13441	A0A074YYH4	A0A075AGX9	Uncharacterized protein.	Uncharacterized protein.	0.913