(37 nodes) RNA polymerase II, holoenzyme network (Opisthorchis viverrini)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_10741	WD_REPEATS_REGION domain-containing protein. (727 aa)
	T265_10596	Uncharacterized protein. (429 aa)
	T265_10984	Uncharacterized protein. (2803 aa)
	T265_16018	WD_REPEATS_REGION domain-containing protein. (122 aa)
	T265_10740	Uncharacterized protein. (76 aa)
	T265_08694	Plus3 domain-containing protein. (828 aa)
	T265_09412	Uncharacterized protein. (67 aa)
	T265_14828	HTH TFE/IIEalpha-type domain-containing protein. (431 aa)
	T265_07453	Uncharacterized protein. (253 aa)
	T265_07434	Uncharacterized protein. (145 aa)
	T265_14216	CID domain-containing protein. (1149 aa)
	T265_14113	Reverse transcriptase domain-containing protein. (1401 aa)
	T265_06756	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (547 aa)
	T265_09719	TPR_REGION domain-containing protein. (1256 aa)
	T265_06498	Uncharacterized protein. (825 aa)
	T265_06290	Uncharacterized protein. (763 aa)
	T265_14327	WD_REPEATS_REGION domain-containing protein. (318 aa)
	T265_04996	Integrase catalytic domain-containing protein. (972 aa)
	T265_13585	Uncharacterized protein. (496 aa)
	T265_04366	TAFH domain-containing protein. (725 aa)
	T265_06245	RNA polymerase K / subunit. (136 aa)
	T265_02597	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (404 aa)
	T265_13266	Uncharacterized protein. (667 aa)
	T265_15386	MAT1 domain-containing protein. (1203 aa)
	T265_01621	TAFII55_N domain-containing protein. (462 aa)
	T265_10407	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (103 aa)
	T265_00433	Uncharacterized protein. (232 aa)
	T265_12509	Uncharacterized protein. (417 aa)
	T265_01404	TAFII28 domain-containing protein. (277 aa)
	T265_13195	FMN_red domain-containing protein. (786 aa)
	T265_12663	Uncharacterized protein. (1079 aa)
	T265_12508	Uncharacterized protein. (443 aa)
	T265_14474	Protein kinase domain-containing protein. (1185 aa)
	T265_08010	CDC73_N domain-containing protein. (501 aa)
	T265_12507	PHD-type domain-containing protein. (758 aa)
	T265_12794	RNA_pol_L_2 domain-containing protein. (267 aa)
	T265_00261	Uncharacterized protein. (931 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_00261	T265_00433	A0A075AJW4	A0A075A221	Uncharacterized protein.	Uncharacterized protein.	0.961
T265_00261	T265_01404	A0A075AJW4	A0A075A2Q0	Uncharacterized protein.	TAFII28 domain-containing protein.	0.849
T265_00261	T265_01621	A0A075AJW4	A0A074ZYR4	Uncharacterized protein.	TAFII55_N domain-containing protein.	0.832
T265_00261	T265_02597	A0A075AJW4	A0A074ZUQ4	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.940
T265_00261	T265_04366	A0A075AJW4	A0A074ZST7	Uncharacterized protein.	TAFH domain-containing protein.	0.823
T265_00261	T265_04996	A0A075AJW4	A0A074ZQI4	Uncharacterized protein.	Integrase catalytic domain-containing protein.	0.972
T265_00261	T265_06245	A0A075AJW4	A0A074ZT17	Uncharacterized protein.	RNA polymerase K / subunit.	0.961
T265_00261	T265_06290	A0A075AJW4	A0A074ZH19	Uncharacterized protein.	Uncharacterized protein.	0.998
T265_00261	T265_06498	A0A075AJW4	A0A074ZG93	Uncharacterized protein.	Uncharacterized protein.	0.999
T265_00261	T265_06756	A0A075AJW4	A0A074ZFD8	Uncharacterized protein.	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.999
T265_00261	T265_07434	A0A075AJW4	A0A074ZCM7	Uncharacterized protein.	Uncharacterized protein.	0.961
T265_00261	T265_07453	A0A075AJW4	A0A074ZCI3	Uncharacterized protein.	Uncharacterized protein.	0.985
T265_00261	T265_09412	A0A075AJW4	A0A074ZA99	Uncharacterized protein.	Uncharacterized protein.	0.962
T265_00261	T265_10407	A0A075AJW4	A0A075A1G3	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.967
T265_00261	T265_10596	A0A075AJW4	A0A074Z1V3	Uncharacterized protein.	Uncharacterized protein.	0.529
T265_00261	T265_10740	A0A075AJW4	A0A074Z5H9	Uncharacterized protein.	Uncharacterized protein.	0.714
T265_00261	T265_10741	A0A075AJW4	A0A074Z1D7	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.714
T265_00261	T265_10984	A0A075AJW4	A0A074Z4N0	Uncharacterized protein.	Uncharacterized protein.	0.827
T265_00261	T265_12507	A0A075AJW4	A0A075ACV1	Uncharacterized protein.	PHD-type domain-containing protein.	0.637
T265_00261	T265_12508	A0A075AJW4	A0A075A682	Uncharacterized protein.	Uncharacterized protein.	0.637