(27 nodes) Nuclear speck network (Opisthorchis viverrini)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_16000	PWI domain-containing protein. (200 aa)
	T265_12071	RRM domain-containing protein. (77 aa)
	T265_11890	RRM domain-containing protein. (700 aa)
	T265_16321	SAP domain-containing protein. (48 aa)
	T265_15683	Uncharacterized protein. (287 aa)
	T265_15151	DNA-(apurinic or apyrimidinic site) lyase; Belongs to the DNA repair enzymes AP/ExoA family. (238 aa)
	T265_10232	C2H2-type domain-containing protein. (433 aa)
	T265_10890	WD_REPEATS_REGION domain-containing protein. (923 aa)
	T265_16058	Uncharacterized protein. (103 aa)
	T265_11508	SFM domain-containing protein. (320 aa)
	T265_10894	Uncharacterized protein. (697 aa)
	T265_04787	Uncharacterized protein. (416 aa)
	T265_05862	DUF2040 domain-containing protein. (419 aa)
	T265_04383	YTH domain-containing protein. (918 aa)
	T265_03943	CBF domain-containing protein. (888 aa)
	T265_04950	U1-type domain-containing protein. (275 aa)
	T265_05104	Uncharacterized protein. (500 aa)
	T265_00997	Btz domain-containing protein. (780 aa)
	T265_07692	RRM domain-containing protein. (324 aa)
	T265_01122	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (177 aa)
	T265_02698	Uncharacterized protein. (96 aa)
	T265_01466	Uncharacterized protein. (650 aa)
	T265_00580	Uncharacterized protein. (641 aa)
	T265_02049	Helicase ATP-binding domain-containing protein. (2081 aa)
	T265_01927	Uncharacterized protein. (262 aa)
	T265_03246	Uncharacterized protein. (436 aa)
	T265_13058	Uncharacterized protein. (1450 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_00997	T265_01122	A0A075ABA5	A0A075AAL2	Btz domain-containing protein.	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	0.999
T265_00997	T265_01927	A0A075ABA5	A0A074ZY38	Btz domain-containing protein.	Uncharacterized protein.	0.577
T265_00997	T265_02698	A0A075ABA5	A0A075A5W8	Btz domain-containing protein.	Uncharacterized protein.	0.682
T265_00997	T265_03246	A0A075ABA5	A0A074ZWM2	Btz domain-containing protein.	Uncharacterized protein.	0.763
T265_00997	T265_04787	A0A075ABA5	A0A074ZMK0	Btz domain-containing protein.	Uncharacterized protein.	0.472
T265_00997	T265_07692	A0A075ABA5	A0A075AAW1	Btz domain-containing protein.	RRM domain-containing protein.	0.587
T265_00997	T265_10894	A0A075ABA5	A0A074ZBJ5	Btz domain-containing protein.	Uncharacterized protein.	0.705
T265_00997	T265_12071	A0A075ABA5	A0A074YWB7	Btz domain-containing protein.	RRM domain-containing protein.	0.472
T265_01122	T265_00997	A0A075AAL2	A0A075ABA5	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	Btz domain-containing protein.	0.999
T265_01122	T265_01927	A0A075AAL2	A0A074ZY38	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	Uncharacterized protein.	0.969
T265_01122	T265_02698	A0A075AAL2	A0A075A5W8	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	Uncharacterized protein.	0.724
T265_01122	T265_03246	A0A075AAL2	A0A074ZWM2	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	Uncharacterized protein.	0.813
T265_01122	T265_04787	A0A075AAL2	A0A074ZMK0	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	Uncharacterized protein.	0.704
T265_01122	T265_07692	A0A075AAL2	A0A075AAW1	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	RRM domain-containing protein.	0.903
T265_01122	T265_10894	A0A075AAL2	A0A074ZBJ5	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	Uncharacterized protein.	0.664
T265_01122	T265_12071	A0A075AAL2	A0A074YWB7	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	RRM domain-containing protein.	0.704
T265_01122	T265_15683	A0A075AAL2	A0A074Z0Q5	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	Uncharacterized protein.	0.577
T265_01122	T265_16321	A0A075AAL2	A0A074YXZ9	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	SAP domain-containing protein.	0.577
T265_01466	T265_07692	A0A075A2C2	A0A075AAW1	Uncharacterized protein.	RRM domain-containing protein.	0.537
T265_01466	T265_10890	A0A075A2C2	A0A074Z4Z9	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.535