(10 nodes) SCF ubiquitin ligase complex network (Opisthorchis viverrini)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_10654	WD_REPEATS_REGION domain-containing protein. (623 aa)
	T265_06381	F-box domain-containing protein. (380 aa)
	T265_04185	F-box domain protein. (384 aa)
	T265_01323	CULLIN_2 domain-containing protein; Belongs to the cullin family. (966 aa)
	T265_00550	F-box domain-containing protein. (461 aa)
	T265_12595	WD domain, G-beta repeat protein. (835 aa)
	T265_00551	F-box domain-containing protein. (486 aa)
	T265_00388	Uncharacterized protein. (420 aa)
	T265_14565	F-box domain-containing protein. (516 aa)
	T265_05946	F-box domain-containing protein. (1044 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_00388	T265_01323	A0A075A6G6	A0A074ZZY9	Uncharacterized protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.638
T265_00388	T265_10654	A0A075A6G6	A0A074Z5S2	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.585
T265_00388	T265_12595	A0A075A6G6	A0A075A5G8	Uncharacterized protein.	WD domain, G-beta repeat protein.	0.585
T265_00550	T265_01323	A0A075A2V8	A0A074ZZY9	F-box domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.541
T265_00551	T265_01323	A0A075A5W0	A0A074ZZY9	F-box domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.541
T265_01323	T265_00388	A0A074ZZY9	A0A075A6G6	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Uncharacterized protein.	0.638
T265_01323	T265_00550	A0A074ZZY9	A0A075A2V8	CULLIN_2 domain-containing protein; Belongs to the cullin family.	F-box domain-containing protein.	0.541
T265_01323	T265_00551	A0A074ZZY9	A0A075A5W0	CULLIN_2 domain-containing protein; Belongs to the cullin family.	F-box domain-containing protein.	0.541
T265_01323	T265_04185	A0A074ZZY9	A0A074ZPR8	CULLIN_2 domain-containing protein; Belongs to the cullin family.	F-box domain protein.	0.853
T265_01323	T265_05946	A0A074ZZY9	A0A075AEN1	CULLIN_2 domain-containing protein; Belongs to the cullin family.	F-box domain-containing protein.	0.920
T265_01323	T265_06381	A0A074ZZY9	A0A074ZGJ3	CULLIN_2 domain-containing protein; Belongs to the cullin family.	F-box domain-containing protein.	0.891
T265_01323	T265_10654	A0A074ZZY9	A0A074Z5S2	CULLIN_2 domain-containing protein; Belongs to the cullin family.	WD_REPEATS_REGION domain-containing protein.	0.978
T265_01323	T265_12595	A0A074ZZY9	A0A075A5G8	CULLIN_2 domain-containing protein; Belongs to the cullin family.	WD domain, G-beta repeat protein.	0.978
T265_01323	T265_14565	A0A074ZZY9	A0A075A8I1	CULLIN_2 domain-containing protein; Belongs to the cullin family.	F-box domain-containing protein.	0.852
T265_04185	T265_01323	A0A074ZPR8	A0A074ZZY9	F-box domain protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.853
T265_04185	T265_05946	A0A074ZPR8	A0A075AEN1	F-box domain protein.	F-box domain-containing protein.	0.433
T265_05946	T265_01323	A0A075AEN1	A0A074ZZY9	F-box domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.920
T265_05946	T265_04185	A0A075AEN1	A0A074ZPR8	F-box domain-containing protein.	F-box domain protein.	0.433
T265_06381	T265_01323	A0A074ZGJ3	A0A074ZZY9	F-box domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.891
T265_10654	T265_00388	A0A074Z5S2	A0A075A6G6	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.585