(13 nodes) Proteasome accessory complex network (Opisthorchis viverrini)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_05484	Uncharacterized protein. (93 aa)
	T265_12331	Uncharacterized protein. (177 aa)
	T265_07637	CSN8_PSD8_EIF3K domain-containing protein. (118 aa)
	T265_13785	Uncharacterized protein. (1593 aa)
	T265_03776	Uncharacterized protein. (299 aa)
	T265_03237	PA28_beta domain-containing protein. (288 aa)
	T265_02379	PCI domain-containing protein. (430 aa)
	T265_10770	Uncharacterized protein. (570 aa)
	T265_12762	Uncharacterized protein. (1330 aa)
	T265_00810	PCI domain-containing protein. (503 aa)
	T265_10217	AAA domain-containing protein; Belongs to the AAA ATPase family. (292 aa)
	T265_03078	PCI domain-containing protein. (451 aa)
	T265_06105	Uncharacterized protein. (217 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_00810	T265_02379	A0A075A1S0	A0A074ZW28	PCI domain-containing protein.	PCI domain-containing protein.	0.988
T265_00810	T265_03078	A0A075A1S0	A0A075A4F1	PCI domain-containing protein.	PCI domain-containing protein.	0.989
T265_00810	T265_03237	A0A075A1S0	A0A074ZT50	PCI domain-containing protein.	PA28_beta domain-containing protein.	0.521
T265_00810	T265_03776	A0A075A1S0	A0A074ZQL6	PCI domain-containing protein.	Uncharacterized protein.	0.434
T265_00810	T265_05484	A0A075A1S0	A0A075AFA7	PCI domain-containing protein.	Uncharacterized protein.	0.926
T265_00810	T265_06105	A0A075A1S0	A0A075AEF8	PCI domain-containing protein.	Uncharacterized protein.	0.915
T265_00810	T265_07637	A0A075A1S0	A0A074ZC72	PCI domain-containing protein.	CSN8_PSD8_EIF3K domain-containing protein.	0.963
T265_00810	T265_10217	A0A075A1S0	A0A075A223	PCI domain-containing protein.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.977
T265_00810	T265_10770	A0A075A1S0	A0A075A019	PCI domain-containing protein.	Uncharacterized protein.	0.920
T265_02379	T265_00810	A0A074ZW28	A0A075A1S0	PCI domain-containing protein.	PCI domain-containing protein.	0.988
T265_02379	T265_03078	A0A074ZW28	A0A075A4F1	PCI domain-containing protein.	PCI domain-containing protein.	0.999
T265_02379	T265_03237	A0A074ZW28	A0A074ZT50	PCI domain-containing protein.	PA28_beta domain-containing protein.	0.529
T265_02379	T265_03776	A0A074ZW28	A0A074ZQL6	PCI domain-containing protein.	Uncharacterized protein.	0.435
T265_02379	T265_05484	A0A074ZW28	A0A075AFA7	PCI domain-containing protein.	Uncharacterized protein.	0.954
T265_02379	T265_06105	A0A074ZW28	A0A075AEF8	PCI domain-containing protein.	Uncharacterized protein.	0.989
T265_02379	T265_07637	A0A074ZW28	A0A074ZC72	PCI domain-containing protein.	CSN8_PSD8_EIF3K domain-containing protein.	0.999
T265_02379	T265_10217	A0A074ZW28	A0A075A223	PCI domain-containing protein.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.999
T265_02379	T265_10770	A0A074ZW28	A0A075A019	PCI domain-containing protein.	Uncharacterized protein.	0.981
T265_02379	T265_12331	A0A074ZW28	A0A074YTW7	PCI domain-containing protein.	Uncharacterized protein.	0.988
T265_03078	T265_00810	A0A075A4F1	A0A075A1S0	PCI domain-containing protein.	PCI domain-containing protein.	0.989