53 items (Opisthorchis viverrini) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_12889	Phosphorylase b kinase regulatory subunit; Phosphorylase b kinase catalyzes the phosphorylation of serine in certain substrates, including troponin I. (1739 aa)
	T265_00261	Uncharacterized protein. (931 aa)
	T265_03314	CYCLIN domain-containing protein; Belongs to the cyclin family. (796 aa)
	T265_13262	Uncharacterized protein. (1378 aa)
	T265_04082	Roc domain-containing protein. (962 aa)
	T265_05289	Uncharacterized protein. (913 aa)
	T265_05464	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function. (128 aa)
	T265_00535	Protein kinase domain-containing protein. (845 aa)
	T265_00611	Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily. (821 aa)
	T265_14474	Protein kinase domain-containing protein. (1185 aa)
	T265_12465	Uncharacterized protein. (331 aa)
	T265_09760	Protein kinase domain-containing protein. (888 aa)
	T265_00028	Phosphorylase b kinase regulatory subunit; Phosphorylase b kinase catalyzes the phosphorylation of serine in certain substrates, including troponin I. (1333 aa)
	T265_09914	Cyclin N-terminal domain-containing protein. (351 aa)
	T265_10437	Cyclin domain protein; Belongs to the cyclin family. (476 aa)
	T265_01981	Uncharacterized protein. (520 aa)
	T265_10870	Phosphorylase b kinase regulatory subunit; Phosphorylase b kinase catalyzes the phosphorylation of serine in certain substrates, including troponin I. (486 aa)
	T265_15386	MAT1 domain-containing protein. (1203 aa)
	T265_13642	ATG11 domain-containing protein. (1646 aa)
	T265_11486	Uncharacterized protein. (111 aa)
	T265_02288	Uncharacterized protein; Belongs to the cyclin family. (637 aa)
	T265_03681	Cyclin N-terminal domain-containing protein. (516 aa)
	T265_03710	Cyclin_C domain-containing protein; Belongs to the cyclin family. (218 aa)
	T265_02597	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (404 aa)
	T265_13303	Uncharacterized protein. (220 aa)
	T265_13696	Receptor protein-tyrosine kinase. (2126 aa)
	T265_04198	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family. (410 aa)
	T265_13461	Uncharacterized protein; Belongs to the cyclin family. (595 aa)
	T265_08011	Protein kinase domain-containing protein. (288 aa)
	T265_05152	Uncharacterized protein. (154 aa)
	T265_05226	Uncharacterized protein. (1341 aa)
	T265_14001	Uncharacterized protein. (688 aa)
	T265_09542	Kinase domain protein; Belongs to the protein kinase superfamily. (427 aa)
	T265_06498	Uncharacterized protein. (825 aa)
	T265_06756	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (547 aa)
	T265_10080	CYCLIN domain-containing protein; Belongs to the cyclin family. (501 aa)
	T265_07453	Uncharacterized protein. (253 aa)
	T265_08938	Uncharacterized protein. (1153 aa)
	T265_09098	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (425 aa)
	T265_08034	SGNH_hydro domain-containing protein. (219 aa)
	T265_08225	BZIP domain-containing protein. (216 aa)
	T265_08934	Protein kinase domain-containing protein. (626 aa)
	T265_10272	Uncharacterized protein; Belongs to the cyclin family. (620 aa)
	T265_10461	Uncharacterized protein. (248 aa)
	T265_10649	Protein kinase domain-containing protein. (556 aa)
	T265_09510	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family. (403 aa)
	T265_16022	Uncharacterized protein. (193 aa)
	T265_09629	AMPKBI domain-containing protein. (515 aa)
	T265_09888	AMPKBI domain-containing protein. (341 aa)
	T265_11493	Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily. (1204 aa)
	T265_11575	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (402 aa)
	T265_15923	Uncharacterized protein. (220 aa)
	T265_16059	PWWP domain-containing protein. (110 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_00028	T265_09098	A0A075A3C8	A0A074ZBD6	Phosphorylase b kinase regulatory subunit; Phosphorylase b kinase catalyzes the phosphorylation of serine in certain substrates, including troponin I.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.799
T265_00261	T265_02597	A0A075AJW4	A0A074ZUQ4	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.940
T265_00261	T265_06498	A0A075AJW4	A0A074ZG93	Uncharacterized protein.	Uncharacterized protein.	0.999
T265_00261	T265_06756	A0A075AJW4	A0A074ZFD8	Uncharacterized protein.	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.999
T265_00261	T265_07453	A0A075AJW4	A0A074ZCI3	Uncharacterized protein.	Uncharacterized protein.	0.985
T265_00261	T265_09760	A0A075AJW4	A0A075A3S3	Uncharacterized protein.	Protein kinase domain-containing protein.	0.729
T265_00261	T265_14474	A0A075AJW4	A0A075A9M7	Uncharacterized protein.	Protein kinase domain-containing protein.	0.940
T265_00261	T265_15386	A0A075AJW4	A0A074ZY80	Uncharacterized protein.	MAT1 domain-containing protein.	0.998
T265_00535	T265_02597	A0A075ACL9	A0A074ZUQ4	Protein kinase domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.610
T265_00535	T265_03314	A0A075ACL9	A0A075AHP9	Protein kinase domain-containing protein.	CYCLIN domain-containing protein; Belongs to the cyclin family.	0.886
T265_00535	T265_03681	A0A075ACL9	A0A074ZV96	Protein kinase domain-containing protein.	Cyclin N-terminal domain-containing protein.	0.448
T265_00535	T265_04198	A0A075ACL9	A0A074ZNZ1	Protein kinase domain-containing protein.	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	0.886
T265_00535	T265_05464	A0A075ACL9	A0A075AF98	Protein kinase domain-containing protein.	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.	0.932
T265_00535	T265_09914	A0A075ACL9	A0A075A372	Protein kinase domain-containing protein.	Cyclin N-terminal domain-containing protein.	0.430
T265_00535	T265_10437	A0A075ACL9	A0A075A1E1	Protein kinase domain-containing protein.	Cyclin domain protein; Belongs to the cyclin family.	0.937
T265_00535	T265_13303	A0A075ACL9	A0A074ZRQ4	Protein kinase domain-containing protein.	Uncharacterized protein.	0.448
T265_00535	T265_13461	A0A075ACL9	A0A074ZNV4	Protein kinase domain-containing protein.	Uncharacterized protein; Belongs to the cyclin family.	0.886
T265_00535	T265_14474	A0A075ACL9	A0A075A9M7	Protein kinase domain-containing protein.	Protein kinase domain-containing protein.	0.642
T265_00535	T265_15386	A0A075ACL9	A0A074ZY80	Protein kinase domain-containing protein.	MAT1 domain-containing protein.	0.475
T265_01981	T265_09629	A0A075A0W5	A0A074Z556	Uncharacterized protein.	AMPKBI domain-containing protein.	0.549