(8 nodes) CRIB domain network (Opisthorchis viverrini)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_02122	Protein kinase domain-containing protein. (959 aa)
	T265_08337	CRIB domain-containing protein. (197 aa)
	T265_06755	Uncharacterized protein. (513 aa)
	T265_08652	Kinase domain protein. (1841 aa)
	T265_06670	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. (1375 aa)
	T265_06687	Uncharacterized protein. (1701 aa)
	T265_14129	Protein kinase domain-containing protein. (917 aa)
	T265_12534	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (478 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_02122	T265_06755	A0A074ZWD3	A0A074ZJE3	Protein kinase domain-containing protein.	Uncharacterized protein.	0.402
T265_06687	T265_06755	A0A074ZJN2	A0A074ZJE3	Uncharacterized protein.	Uncharacterized protein.	0.404
T265_06755	T265_02122	A0A074ZJE3	A0A074ZWD3	Uncharacterized protein.	Protein kinase domain-containing protein.	0.402
T265_06755	T265_06687	A0A074ZJE3	A0A074ZJN2	Uncharacterized protein.	Uncharacterized protein.	0.404
T265_06755	T265_12534	A0A074ZJE3	A0A075A614	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.402
T265_06755	T265_14129	A0A074ZJE3	A0A074ZR97	Uncharacterized protein.	Protein kinase domain-containing protein.	0.402
T265_12534	T265_06755	A0A075A614	A0A074ZJE3	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.402
T265_14129	T265_06755	A0A074ZR97	A0A074ZJE3	Protein kinase domain-containing protein.	Uncharacterized protein.	0.402