(13 nodes) Ionotropic glutamate receptor, C-terminal network (Opisthorchis viverrini)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_10270	Uncharacterized protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family. (646 aa)
	T265_14724	Uncharacterized protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family. (727 aa)
	T265_08425	Uncharacterized protein. (1067 aa)
	T265_07728	Uncharacterized protein. (621 aa)
	T265_14323	Uncharacterized protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family. (573 aa)
	T265_04393	Uncharacterized protein. (1531 aa)
	T265_02868	PBPe domain-containing protein. (481 aa)
	T265_12893	PBPe domain-containing protein. (182 aa)
	T265_04392	Uncharacterized protein. (824 aa)
	T265_12627	PBPe domain-containing protein. (455 aa)
	T265_00747	Uncharacterized protein. (325 aa)
	T265_08421	Uncharacterized protein. (997 aa)
	T265_07724	PBPe domain-containing protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family. (428 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_00747	T265_12627	A0A075A570	A0A075A138	Uncharacterized protein.	PBPe domain-containing protein.	0.494
T265_02868	T265_08421	A0A074ZUE0	A0A075A8H0	PBPe domain-containing protein.	Uncharacterized protein.	0.833
T265_07724	T265_08421	A0A075AAV6	A0A075A8H0	PBPe domain-containing protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	Uncharacterized protein.	0.461
T265_08421	T265_02868	A0A075A8H0	A0A074ZUE0	Uncharacterized protein.	PBPe domain-containing protein.	0.833
T265_08421	T265_07724	A0A075A8H0	A0A075AAV6	Uncharacterized protein.	PBPe domain-containing protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	0.461
T265_08421	T265_08425	A0A075A8H0	A0A074Z9I4	Uncharacterized protein.	Uncharacterized protein.	0.912
T265_08421	T265_12893	A0A075A8H0	A0A074ZY19	Uncharacterized protein.	PBPe domain-containing protein.	0.461
T265_08421	T265_14724	A0A075A8H0	A0A074Z757	Uncharacterized protein.	Uncharacterized protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	0.996
T265_08425	T265_08421	A0A074Z9I4	A0A075A8H0	Uncharacterized protein.	Uncharacterized protein.	0.912
T265_08425	T265_14724	A0A074Z9I4	A0A074Z757	Uncharacterized protein.	Uncharacterized protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	0.919
T265_12627	T265_00747	A0A075A138	A0A075A570	PBPe domain-containing protein.	Uncharacterized protein.	0.494
T265_12627	T265_12893	A0A075A138	A0A074ZY19	PBPe domain-containing protein.	PBPe domain-containing protein.	0.410
T265_12893	T265_08421	A0A074ZY19	A0A075A8H0	PBPe domain-containing protein.	Uncharacterized protein.	0.461
T265_12893	T265_12627	A0A074ZY19	A0A075A138	PBPe domain-containing protein.	PBPe domain-containing protein.	0.410
T265_14724	T265_08421	A0A074Z757	A0A075A8H0	Uncharacterized protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	Uncharacterized protein.	0.996
T265_14724	T265_08425	A0A074Z757	A0A074Z9I4	Uncharacterized protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	Uncharacterized protein.	0.919