(67 nodes) PDZ domain network (Opisthorchis viverrini)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_04653	Uncharacterized protein. (2458 aa)
	T265_15900	PDZ domain-containing protein. (162 aa)
	T265_03173	Uncharacterized protein. (1009 aa)
	T265_04294	PDZ domain-containing protein. (170 aa)
	T265_04658	Uncharacterized protein. (2423 aa)
	T265_13686	PDZ domain-containing protein. (458 aa)
	T265_14234	Uncharacterized protein. (882 aa)
	T265_05366	PDZ domain-containing protein. (190 aa)
	T265_07588	Uncharacterized protein; Belongs to the MAGUK family. (519 aa)
	T265_13562	PDZ domain-containing protein. (671 aa)
	T265_07713	Uncharacterized protein. (948 aa)
	T265_04497	PDZ domain-containing protein. (430 aa)
	T265_13588	PDZ domain-containing protein. (553 aa)
	T265_05159	PDZ domain-containing protein. (151 aa)
	T265_06722	PDZ domain-containing protein. (481 aa)
	T265_13911	PDZ domain-containing protein. (493 aa)
	T265_07221	Uncharacterized protein. (764 aa)
	T265_13957	Uncharacterized protein. (962 aa)
	T265_07415	Uncharacterized protein. (1053 aa)
	T265_06179	Uncharacterized protein. (433 aa)
	T265_06233	Uncharacterized protein. (1284 aa)
	T265_06307	PDZ/DHR/GLGF domain protein. (353 aa)
	T265_09513	PDZ domain-containing protein. (825 aa)
	T265_06682	Uncharacterized protein; Belongs to the MAGUK family. (860 aa)
	T265_08105	Uncharacterized protein. (1628 aa)
	T265_15025	Uncharacterized protein. (874 aa)
	T265_08424	Uncharacterized protein. (1213 aa)
	T265_15158	Uncharacterized protein. (1043 aa)
	T265_08629	Uncharacterized protein. (1059 aa)
	T265_14287	PDZ domain-containing protein. (433 aa)
	T265_10653	Uncharacterized protein. (317 aa)
	T265_16173	PDZ domain-containing protein. (105 aa)
	T265_11076	Uncharacterized protein. (1263 aa)
	T265_10241	PDZ domain-containing protein. (641 aa)
	T265_13832	PDZ domain-containing protein. (530 aa)
	T265_00097	PDZ domain-containing protein. (567 aa)
	T265_00199	Uncharacterized protein. (2514 aa)
	T265_07174	Uncharacterized protein. (483 aa)
	T265_12695	LIM domain protein. (316 aa)
	T265_14490	Uncharacterized protein. (1062 aa)
	T265_08239	PDZ domain-containing protein. (1487 aa)
	T265_14527	PDZ domain-containing protein. (319 aa)
	T265_08398	Uncharacterized protein. (1478 aa)
	T265_14559	Uncharacterized protein. (2220 aa)
	T265_08612	PDZ domain-containing protein. (376 aa)
	T265_08644	Uncharacterized protein. (1319 aa)
	T265_14657	Uncharacterized protein. (1878 aa)
	T265_15024	Uncharacterized protein. (424 aa)
	T265_10043	Uncharacterized protein. (556 aa)
	T265_10336	Uncharacterized protein. (1463 aa)
	T265_09973	PDZ/DHR/GLGF domain protein. (302 aa)
	T265_00461	PDZ domain-containing protein. (521 aa)
	T265_02141	Uncharacterized protein. (449 aa)
	T265_03534	Uncharacterized protein. (1130 aa)
	T265_13414	Uncharacterized protein. (1381 aa)
	T265_13569	Uncharacterized protein. (1788 aa)
	T265_00613	Uncharacterized protein. (193 aa)
	T265_03172	Uncharacterized protein. (439 aa)
	T265_00091	Uncharacterized protein. (1258 aa)
	T265_00463	Uncharacterized protein; Belongs to the MAGUK family. (917 aa)
	T265_09074	Uncharacterized protein; Belongs to the MAGUK family. (534 aa)
	T265_12912	Uncharacterized protein. (714 aa)
	T265_10342	Uncharacterized protein. (852 aa)
	T265_12718	Uncharacterized protein. (1509 aa)
	T265_04273	Uncharacterized protein. (2443 aa)
	T265_04969	Uncharacterized protein. (738 aa)
	T265_05198	PDZ domain-containing protein. (494 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_00091	T265_00463	A0A075A3J9	A0A075A359	Uncharacterized protein.	Uncharacterized protein; Belongs to the MAGUK family.	0.566
T265_00091	T265_10653	A0A075A3J9	A0A074ZCH6	Uncharacterized protein.	Uncharacterized protein.	0.830
T265_00091	T265_13569	A0A075A3J9	A0A075AG77	Uncharacterized protein.	Uncharacterized protein.	0.900
T265_00097	T265_00463	A0A075ADJ0	A0A075A359	PDZ domain-containing protein.	Uncharacterized protein; Belongs to the MAGUK family.	0.562
T265_00097	T265_10653	A0A075ADJ0	A0A074ZCH6	PDZ domain-containing protein.	Uncharacterized protein.	0.548
T265_00463	T265_00091	A0A075A359	A0A075A3J9	Uncharacterized protein; Belongs to the MAGUK family.	Uncharacterized protein.	0.566
T265_00463	T265_00097	A0A075A359	A0A075ADJ0	Uncharacterized protein; Belongs to the MAGUK family.	PDZ domain-containing protein.	0.562
T265_00463	T265_00613	A0A075A359	A0A075A5C3	Uncharacterized protein; Belongs to the MAGUK family.	Uncharacterized protein.	0.999
T265_00463	T265_03172	A0A075A359	A0A075A4C3	Uncharacterized protein; Belongs to the MAGUK family.	Uncharacterized protein.	0.562
T265_00463	T265_04658	A0A075A359	A0A074ZRR6	Uncharacterized protein; Belongs to the MAGUK family.	Uncharacterized protein.	0.581
T265_00463	T265_04969	A0A075A359	A0A074ZXT3	Uncharacterized protein; Belongs to the MAGUK family.	Uncharacterized protein.	0.562
T265_00463	T265_05159	A0A075A359	A0A074ZLC0	Uncharacterized protein; Belongs to the MAGUK family.	PDZ domain-containing protein.	0.562
T265_00463	T265_05198	A0A075A359	A0A074ZWW7	Uncharacterized protein; Belongs to the MAGUK family.	PDZ domain-containing protein.	0.460
T265_00463	T265_06179	A0A075A359	A0A074ZH48	Uncharacterized protein; Belongs to the MAGUK family.	Uncharacterized protein.	0.948
T265_00463	T265_06233	A0A075A359	A0A074ZGV3	Uncharacterized protein; Belongs to the MAGUK family.	Uncharacterized protein.	0.581
T265_00463	T265_06307	A0A075A359	A0A074ZGP1	Uncharacterized protein; Belongs to the MAGUK family.	PDZ/DHR/GLGF domain protein.	0.512
T265_00463	T265_06682	A0A075A359	A0A074ZFM2	Uncharacterized protein; Belongs to the MAGUK family.	Uncharacterized protein; Belongs to the MAGUK family.	0.496
T265_00463	T265_07221	A0A075A359	A0A074ZHR1	Uncharacterized protein; Belongs to the MAGUK family.	Uncharacterized protein.	0.581
T265_00463	T265_07415	A0A075A359	A0A074ZH51	Uncharacterized protein; Belongs to the MAGUK family.	Uncharacterized protein.	0.581
T265_00463	T265_07588	A0A075A359	A0A074ZNE6	Uncharacterized protein; Belongs to the MAGUK family.	Uncharacterized protein; Belongs to the MAGUK family.	0.460