(11 nodes) Nuclear hormone receptor network (Opisthorchis viverrini)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_13267	Uncharacterized protein. (434 aa)
	T265_07202	Uncharacterized protein. (1229 aa)
	T265_13831	Uncharacterized protein. (1186 aa)
	T265_13595	Nuclear receptor domain-containing protein. (622 aa)
	T265_03785	Uncharacterized protein. (877 aa)
	T265_04767	NR LBD domain-containing protein. (502 aa)
	T265_03584	Uncharacterized protein. (861 aa)
	T265_13732	NR LBD domain-containing protein. (516 aa)
	T265_04073	Uncharacterized protein. (1085 aa)
	T265_03243	Uncharacterized protein. (615 aa)
	T265_12785	Uncharacterized protein. (1022 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_03243	T265_07202	A0A075AHQ5	A0A074ZDF1	Uncharacterized protein.	Uncharacterized protein.	0.401
T265_03243	T265_13267	A0A075AHQ5	A0A075A345	Uncharacterized protein.	Uncharacterized protein.	0.470
T265_03243	T265_13732	A0A075AHQ5	A0A074ZWV1	Uncharacterized protein.	NR LBD domain-containing protein.	0.564
T265_03243	T265_13831	A0A075AHQ5	A0A074ZJT8	Uncharacterized protein.	Uncharacterized protein.	0.564
T265_03584	T265_07202	A0A074ZRY7	A0A074ZDF1	Uncharacterized protein.	Uncharacterized protein.	0.436
T265_03785	T265_04767	A0A074ZQ83	A0A074ZRD0	Uncharacterized protein.	NR LBD domain-containing protein.	0.444
T265_04767	T265_03785	A0A074ZRD0	A0A074ZQ83	NR LBD domain-containing protein.	Uncharacterized protein.	0.444
T265_04767	T265_13595	A0A074ZRD0	A0A074ZLY4	NR LBD domain-containing protein.	Nuclear receptor domain-containing protein.	0.454
T265_07202	T265_03243	A0A074ZDF1	A0A075AHQ5	Uncharacterized protein.	Uncharacterized protein.	0.401
T265_07202	T265_03584	A0A074ZDF1	A0A074ZRY7	Uncharacterized protein.	Uncharacterized protein.	0.436
T265_13267	T265_03243	A0A075A345	A0A075AHQ5	Uncharacterized protein.	Uncharacterized protein.	0.470
T265_13595	T265_04767	A0A074ZLY4	A0A074ZRD0	Nuclear receptor domain-containing protein.	NR LBD domain-containing protein.	0.454
T265_13732	T265_03243	A0A074ZWV1	A0A075AHQ5	NR LBD domain-containing protein.	Uncharacterized protein.	0.564
T265_13831	T265_03243	A0A074ZJT8	A0A075AHQ5	Uncharacterized protein.	Uncharacterized protein.	0.564