(38 nodes) Zinc finger, PHD-type network (Opisthorchis viverrini)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_12061	PHD-type domain-containing protein. (1052 aa)
	T265_12021	Uncharacterized protein. (1431 aa)
	T265_11800	Uncharacterized protein. (3367 aa)
	T265_11373	Bromo domain-containing protein. (2070 aa)
	T265_09729	UBR-type domain-containing protein. (432 aa)
	T265_14353	Uncharacterized protein. (1686 aa)
	T265_14676	PHD-type domain-containing protein. (755 aa)
	T265_07243	Uncharacterized protein. (1223 aa)
	T265_15141	Uncharacterized protein. (888 aa)
	T265_06804	Uncharacterized protein. (1365 aa)
	T265_09728	Inhibitor of growth protein. (631 aa)
	T265_06604	Uncharacterized protein. (2022 aa)
	T265_13785	Uncharacterized protein. (1593 aa)
	T265_04752	Uncharacterized protein. (1339 aa)
	T265_13393	SET domain-containing protein. (2339 aa)
	T265_03909	PHD-type domain-containing protein. (1074 aa)
	T265_03882	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (2765 aa)
	T265_04602	BAH domain-containing protein. (2687 aa)
	T265_04076	Uncharacterized protein. (4285 aa)
	T265_02628	PHD-type domain-containing protein. (761 aa)
	T265_05762	HORMA domain-containing protein. (505 aa)
	T265_13279	Uncharacterized protein. (819 aa)
	T265_05174	Uncharacterized protein. (2219 aa)
	T265_13136	PHD-type domain-containing protein. (133 aa)
	T265_01262	Uncharacterized protein. (3012 aa)
	T265_04036	Uncharacterized protein. (907 aa)
	T265_02966	Uncharacterized protein. (808 aa)
	T265_12618	Uncharacterized protein. (3389 aa)
	T265_01747	PHD-type domain-containing protein. (930 aa)
	T265_07302	PHD-type domain-containing protein. (384 aa)
	T265_07161	Inhibitor of growth protein. (387 aa)
	T265_12507	PHD-type domain-containing protein. (758 aa)
	T265_00307	Uncharacterized protein. (770 aa)
	T265_13605	Uncharacterized protein. (1791 aa)
	T265_13347	Uncharacterized protein. (1125 aa)
	T265_03575	Uncharacterized protein. (1182 aa)
	T265_00803	Uncharacterized protein. (1403 aa)
	T265_00193	Uncharacterized protein. (1029 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_00193	T265_05174	A0A075AJU5	A0A074ZX15	Uncharacterized protein.	Uncharacterized protein.	0.500
T265_00193	T265_13347	A0A075AJU5	A0A075AHA7	Uncharacterized protein.	Uncharacterized protein.	0.453
T265_00193	T265_13785	A0A075AJU5	A0A074ZJK2	Uncharacterized protein.	Uncharacterized protein.	0.453
T265_00803	T265_06804	A0A075AJF7	A0A074ZF72	Uncharacterized protein.	Uncharacterized protein.	0.795
T265_00803	T265_07161	A0A075AJF7	A0A075ACB2	Uncharacterized protein.	Inhibitor of growth protein.	0.573
T265_00803	T265_09728	A0A075AJF7	A0A074ZFU3	Uncharacterized protein.	Inhibitor of growth protein.	0.573
T265_00803	T265_13393	A0A075AJF7	A0A074ZPM0	Uncharacterized protein.	SET domain-containing protein.	0.505
T265_00803	T265_14676	A0A075AJF7	A0A074ZCE7	Uncharacterized protein.	PHD-type domain-containing protein.	0.573
T265_00803	T265_15141	A0A075AJF7	A0A074ZDH6	Uncharacterized protein.	Uncharacterized protein.	0.477
T265_01262	T265_06604	A0A074ZZB1	A0A074ZFV1	Uncharacterized protein.	Uncharacterized protein.	0.499
T265_02628	T265_06804	A0A074ZUB2	A0A074ZF72	PHD-type domain-containing protein.	Uncharacterized protein.	0.620
T265_02628	T265_07302	A0A074ZUB2	A0A075AC04	PHD-type domain-containing protein.	PHD-type domain-containing protein.	0.407
T265_03882	T265_06604	A0A074ZQT6	A0A074ZFV1	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	Uncharacterized protein.	0.480
T265_03882	T265_06804	A0A074ZQT6	A0A074ZF72	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	Uncharacterized protein.	0.827
T265_03882	T265_07161	A0A074ZQT6	A0A075ACB2	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	Inhibitor of growth protein.	0.678
T265_03882	T265_09728	A0A074ZQT6	A0A074ZFU3	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	Inhibitor of growth protein.	0.718
T265_03882	T265_13347	A0A074ZQT6	A0A075AHA7	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	Uncharacterized protein.	0.403
T265_03882	T265_13393	A0A074ZQT6	A0A074ZPM0	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	SET domain-containing protein.	0.510
T265_03882	T265_13785	A0A074ZQT6	A0A074ZJK2	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	Uncharacterized protein.	0.403
T265_03882	T265_14676	A0A074ZQT6	A0A074ZCE7	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	PHD-type domain-containing protein.	0.713