(58 nodes) Small GTP-binding protein domain network (Opisthorchis viverrini)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_04520	Uncharacterized protein. (239 aa)
	T265_07457	Uncharacterized protein. (286 aa)
	T265_04388	Uncharacterized protein. (339 aa)
	T265_06868	Uncharacterized protein. (331 aa)
	T265_03000	Uncharacterized protein. (210 aa)
	T265_03316	Uncharacterized protein. (240 aa)
	T265_01863	Uncharacterized protein. (400 aa)
	T265_13575	Uncharacterized protein. (219 aa)
	T265_02549	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family. (199 aa)
	T265_02538	Reverse transcriptase domain-containing protein. (618 aa)
	T265_10885	Uncharacterized protein. (217 aa)
	T265_15145	Uncharacterized protein. (329 aa)
	T265_12666	Uncharacterized protein. (332 aa)
	T265_15043	Tr-type G domain-containing protein. (708 aa)
	T265_00260	Uncharacterized protein. (288 aa)
	T265_01271	EF-hand domain-containing protein. (1162 aa)
	T265_00095	Uncharacterized protein. (259 aa)
	T265_00011	Uncharacterized protein. (233 aa)
	T265_00224	G domain-containing protein. (958 aa)
	T265_00829	Uncharacterized protein. (163 aa)
	T265_03281	Uncharacterized protein. (249 aa)
	T265_04525	Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (446 aa)
	T265_05298	Tr-type G domain-containing protein. (867 aa)
	T265_00020	Uncharacterized protein. (357 aa)
	T265_14092	Uncharacterized protein. (218 aa)
	T265_14106	Uncharacterized protein. (512 aa)
	T265_00309	Uncharacterized protein. (259 aa)
	T265_14821	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family. (245 aa)
	T265_13175	Uncharacterized protein. (99 aa)
	T265_15799	Uncharacterized protein. (142 aa)
	T265_11555	Ras family protein. (188 aa)
	T265_11154	Uncharacterized protein. (263 aa)
	T265_09997	Uncharacterized protein. (353 aa)
	T265_09874	OBG-type G domain-containing protein. (300 aa)
	T265_09132	Uncharacterized protein. (192 aa)
	T265_10340	Uncharacterized protein. (215 aa)
	T265_08991	Uncharacterized protein. (175 aa)
	T265_09689	Uncharacterized protein. (1279 aa)
	T265_14505	Uncharacterized protein. (217 aa)
	T265_11007	Tr-type G domain-containing protein. (720 aa)
	T265_14719	Uncharacterized protein. (183 aa)
	T265_10821	Ras family protein. (262 aa)
	T265_07275	Uncharacterized protein. (202 aa)
	T265_10268	Tr-type G domain-containing protein. (839 aa)
	T265_13231	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (196 aa)
	T265_05208	OBG-type G domain-containing protein. (490 aa)
	T265_07070	Uncharacterized protein. (198 aa)
	T265_15041	Uncharacterized protein. (182 aa)
	T265_14125	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (158 aa)
	T265_06814	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (194 aa)
	T265_09699	Uncharacterized protein. (230 aa)
	T265_06197	Uncharacterized protein. (208 aa)
	T265_05860	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (141 aa)
	T265_06684	ADP-ribosylation factor family protein; Belongs to the small GTPase superfamily. Arf family. (265 aa)
	T265_05196	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (202 aa)
	T265_14520	Uncharacterized protein. (301 aa)
	T265_05333	Ras family protein. (227 aa)
	T265_04832	Reverse transcriptase domain-containing protein. (626 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_00011	T265_00309	A0A075AJX1	A0A075A694	Uncharacterized protein.	Uncharacterized protein.	0.475
T265_00011	T265_00829	A0A075AJX1	A0A075AJG4	Uncharacterized protein.	Uncharacterized protein.	0.432
T265_00011	T265_04520	A0A075AJX1	A0A074ZMX6	Uncharacterized protein.	Uncharacterized protein.	0.412
T265_00011	T265_06684	A0A075AJX1	A0A074ZJM6	Uncharacterized protein.	ADP-ribosylation factor family protein; Belongs to the small GTPase superfamily. Arf family.	0.463
T265_00011	T265_06868	A0A075AJX1	A0A074ZR04	Uncharacterized protein.	Uncharacterized protein.	0.432
T265_00011	T265_07070	A0A075AJX1	A0A074ZDZ6	Uncharacterized protein.	Uncharacterized protein.	0.519
T265_00011	T265_07457	A0A075AJX1	A0A074ZNU8	Uncharacterized protein.	Uncharacterized protein.	0.473
T265_00011	T265_08991	A0A075AJX1	A0A074Z782	Uncharacterized protein.	Uncharacterized protein.	0.433
T265_00011	T265_09132	A0A075AJX1	A0A074Z6P2	Uncharacterized protein.	Uncharacterized protein.	0.477
T265_00011	T265_10340	A0A075AJX1	A0A074Z6W5	Uncharacterized protein.	Uncharacterized protein.	0.483
T265_00011	T265_10821	A0A075AJX1	A0A074ZBX2	Uncharacterized protein.	Ras family protein.	0.476
T265_00011	T265_11555	A0A075AJX1	A0A074YYL5	Uncharacterized protein.	Ras family protein.	0.460
T265_00011	T265_14719	A0A075AJX1	A0A074ZBR7	Uncharacterized protein.	Uncharacterized protein.	0.465
T265_00011	T265_15145	A0A075AJX1	A0A075A1H1	Uncharacterized protein.	Uncharacterized protein.	0.480
T265_00011	T265_15799	A0A075AJX1	A0A074YVY0	Uncharacterized protein.	Uncharacterized protein.	0.432
T265_00020	T265_00829	A0A075ADF1	A0A075AJG4	Uncharacterized protein.	Uncharacterized protein.	0.405
T265_00020	T265_03281	A0A075ADF1	A0A075AHP0	Uncharacterized protein.	Uncharacterized protein.	0.586
T265_00020	T265_04520	A0A075ADF1	A0A074ZMX6	Uncharacterized protein.	Uncharacterized protein.	0.404
T265_00020	T265_04832	A0A075ADF1	A0A074ZMI4	Uncharacterized protein.	Reverse transcriptase domain-containing protein.	0.646
T265_00020	T265_05196	A0A075ADF1	A0A074ZKI1	Uncharacterized protein.	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	0.488