(14 nodes) Neurotransmitter-gated ion-channel transmembrane domain network (Opisthorchis viverrini)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_08541	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family. (467 aa)
	T265_15588	Uncharacterized protein. (784 aa)
	T265_06210	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family. (558 aa)
	T265_13973	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family. (221 aa)
	T265_06813	Neurotransmitter-gated ion-channel ligand binding domain protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family. (472 aa)
	T265_06211	Uncharacterized protein. (641 aa)
	T265_06225	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family. (491 aa)
	T265_14364	Uncharacterized protein. (843 aa)
	T265_05667	Uncharacterized protein. (648 aa)
	T265_03886	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family. (710 aa)
	T265_06223	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family. (503 aa)
	T265_13190	Uncharacterized protein. (241 aa)
	T265_13118	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family. (619 aa)
	T265_05648	Uncharacterized protein. (788 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_03886	T265_13190	A0A074ZQU3	A0A074ZTC9	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Uncharacterized protein.	0.464
T265_03886	T265_14364	A0A074ZQU3	A0A074ZMX7	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Uncharacterized protein.	0.438
T265_05648	T265_05667	A0A075AF04	A0A074ZND2	Uncharacterized protein.	Uncharacterized protein.	0.579
T265_05648	T265_06210	A0A075AF04	A0A074ZH10	Uncharacterized protein.	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.554
T265_05648	T265_06211	A0A075AF04	A0A074ZLA3	Uncharacterized protein.	Uncharacterized protein.	0.585
T265_05648	T265_13118	A0A075AF04	A0A074ZTI9	Uncharacterized protein.	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.417
T265_05648	T265_13190	A0A075AF04	A0A074ZTC9	Uncharacterized protein.	Uncharacterized protein.	0.576
T265_05648	T265_14364	A0A075AF04	A0A074ZMX7	Uncharacterized protein.	Uncharacterized protein.	0.614
T265_05648	T265_15588	A0A075AF04	A0A074YWW8	Uncharacterized protein.	Uncharacterized protein.	0.427
T265_05667	T265_05648	A0A074ZND2	A0A075AF04	Uncharacterized protein.	Uncharacterized protein.	0.579
T265_05667	T265_06813	A0A074ZND2	A0A074ZJ34	Uncharacterized protein.	Neurotransmitter-gated ion-channel ligand binding domain protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.415
T265_06210	T265_05648	A0A074ZH10	A0A075AF04	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Uncharacterized protein.	0.554
T265_06211	T265_05648	A0A074ZLA3	A0A075AF04	Uncharacterized protein.	Uncharacterized protein.	0.585
T265_06211	T265_06813	A0A074ZLA3	A0A074ZJ34	Uncharacterized protein.	Neurotransmitter-gated ion-channel ligand binding domain protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.404
T265_06223	T265_06225	A0A074ZT74	A0A074ZLB9	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.901
T265_06225	T265_06223	A0A074ZLB9	A0A074ZT74	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.901
T265_06813	T265_05667	A0A074ZJ34	A0A074ZND2	Neurotransmitter-gated ion-channel ligand binding domain protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Uncharacterized protein.	0.415
T265_06813	T265_06211	A0A074ZJ34	A0A074ZLA3	Neurotransmitter-gated ion-channel ligand binding domain protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Uncharacterized protein.	0.404
T265_06813	T265_13118	A0A074ZJ34	A0A074ZTI9	Neurotransmitter-gated ion-channel ligand binding domain protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	0.437
T265_06813	T265_13190	A0A074ZJ34	A0A074ZTC9	Neurotransmitter-gated ion-channel ligand binding domain protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.	Uncharacterized protein.	0.404