(64 nodes) Zinc finger, FYVE/PHD-type network (Opisthorchis viverrini)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_09881	Uncharacterized protein. (767 aa)
	T265_02966	Uncharacterized protein. (808 aa)
	T265_12618	Uncharacterized protein. (3389 aa)
	T265_00335	Uncharacterized protein. (2194 aa)
	T265_00982	Uncharacterized protein. (171 aa)
	T265_08718	Uncharacterized protein. (64 aa)
	T265_13523	Uncharacterized protein. (897 aa)
	T265_01262	Uncharacterized protein. (3012 aa)
	T265_01430	Uncharacterized protein. (610 aa)
	T265_01423	Uncharacterized protein. (884 aa)
	T265_04896	SLBP_RNA_bind domain-containing protein. (689 aa)
	T265_02798	C2H2-type domain-containing protein. (556 aa)
	T265_05174	Uncharacterized protein. (2219 aa)
	T265_03373	Uncharacterized protein. (329 aa)
	T265_02516	Uncharacterized protein. (374 aa)
	T265_13279	Uncharacterized protein. (819 aa)
	T265_05762	HORMA domain-containing protein. (505 aa)
	T265_05933	FYVE-type domain-containing protein. (261 aa)
	T265_04076	Uncharacterized protein. (4285 aa)
	T265_04602	BAH domain-containing protein. (2687 aa)
	T265_03882	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (2765 aa)
	T265_03909	PHD-type domain-containing protein. (1074 aa)
	T265_13393	SET domain-containing protein. (2339 aa)
	T265_04381	Uncharacterized protein. (326 aa)
	T265_01792	Uncharacterized protein. (76 aa)
	T265_04752	Uncharacterized protein. (1339 aa)
	T265_07954	Uncharacterized protein. (177 aa)
	T265_04916	B box-type domain-containing protein. (718 aa)
	T265_13785	Uncharacterized protein. (1593 aa)
	T265_05798	Uncharacterized protein. (3094 aa)
	T265_07364	Uncharacterized protein. (834 aa)
	T265_06604	Uncharacterized protein. (2022 aa)
	T265_09728	Inhibitor of growth protein. (631 aa)
	T265_06804	Uncharacterized protein. (1365 aa)
	T265_15141	Uncharacterized protein. (888 aa)
	T265_07243	Uncharacterized protein. (1223 aa)
	T265_14676	PHD-type domain-containing protein. (755 aa)
	T265_14353	Uncharacterized protein. (1686 aa)
	T265_08692	Uncharacterized protein. (3549 aa)
	T265_14669	Uncharacterized protein. (1023 aa)
	T265_09507	C2 domain-containing protein. (695 aa)
	T265_09729	UBR-type domain-containing protein. (432 aa)
	T265_15007	Uncharacterized protein. (383 aa)
	T265_15672	Uncharacterized protein. (418 aa)
	T265_11373	Bromo domain-containing protein. (2070 aa)
	T265_11800	Uncharacterized protein. (3367 aa)
	T265_12104	Uncharacterized protein. (1950 aa)
	T265_12061	PHD-type domain-containing protein. (1052 aa)
	T265_01747	PHD-type domain-containing protein. (930 aa)
	T265_01253	Uncharacterized protein. (400 aa)
	T265_07729	C2H2-type domain-containing protein. (1247 aa)
	T265_00848	Uncharacterized protein. (923 aa)
	T265_07302	PHD-type domain-containing protein. (384 aa)
	T265_07161	Inhibitor of growth protein. (387 aa)
	T265_12507	PHD-type domain-containing protein. (758 aa)
	T265_00307	Uncharacterized protein. (770 aa)
	T265_00254	Uncharacterized protein. (684 aa)
	T265_04271	FYVE_2 domain-containing protein. (856 aa)
	T265_13347	Uncharacterized protein. (1125 aa)
	T265_02589	SNF2_N domain-containing protein. (522 aa)
	T265_00803	Uncharacterized protein. (1403 aa)
	T265_00266	Uncharacterized protein. (329 aa)
	T265_00960	Uncharacterized protein. (963 aa)
	T265_04036	Uncharacterized protein. (907 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_00335	T265_01262	A0A075A6B3	A0A074ZZB1	Uncharacterized protein.	Uncharacterized protein.	0.520
T265_00335	T265_04602	A0A075A6B3	A0A074ZRU7	Uncharacterized protein.	BAH domain-containing protein.	0.410
T265_00335	T265_04916	A0A075A6B3	A0A074ZLL8	Uncharacterized protein.	B box-type domain-containing protein.	0.440
T265_00335	T265_05798	A0A075A6B3	A0A074ZJE2	Uncharacterized protein.	Uncharacterized protein.	0.536
T265_00335	T265_11800	A0A075A6B3	A0A074YXN4	Uncharacterized protein.	Uncharacterized protein.	0.591
T265_00335	T265_12061	A0A075A6B3	A0A074YW49	Uncharacterized protein.	PHD-type domain-containing protein.	0.511
T265_00335	T265_12104	A0A075A6B3	A0A074YW50	Uncharacterized protein.	Uncharacterized protein.	0.422
T265_00335	T265_14353	A0A075A6B3	A0A074ZC58	Uncharacterized protein.	Uncharacterized protein.	0.499
T265_00803	T265_06804	A0A075AJF7	A0A074ZF72	Uncharacterized protein.	Uncharacterized protein.	0.795
T265_00803	T265_07161	A0A075AJF7	A0A075ACB2	Uncharacterized protein.	Inhibitor of growth protein.	0.573
T265_00803	T265_07729	A0A075AJF7	A0A075AAV9	Uncharacterized protein.	C2H2-type domain-containing protein.	0.505
T265_00803	T265_09728	A0A075AJF7	A0A074ZFU3	Uncharacterized protein.	Inhibitor of growth protein.	0.573
T265_00803	T265_12104	A0A075AJF7	A0A074YW50	Uncharacterized protein.	Uncharacterized protein.	0.453
T265_00803	T265_13393	A0A075AJF7	A0A074ZPM0	Uncharacterized protein.	SET domain-containing protein.	0.505
T265_00803	T265_14676	A0A075AJF7	A0A074ZCE7	Uncharacterized protein.	PHD-type domain-containing protein.	0.573
T265_00803	T265_15141	A0A075AJF7	A0A074ZDH6	Uncharacterized protein.	Uncharacterized protein.	0.477
T265_01262	T265_00335	A0A074ZZB1	A0A075A6B3	Uncharacterized protein.	Uncharacterized protein.	0.520
T265_01262	T265_02589	A0A074ZZB1	A0A075AI76	Uncharacterized protein.	SNF2_N domain-containing protein.	0.512
T265_01262	T265_06604	A0A074ZZB1	A0A074ZFV1	Uncharacterized protein.	Uncharacterized protein.	0.499
T265_01262	T265_12104	A0A074ZZB1	A0A074YW50	Uncharacterized protein.	Uncharacterized protein.	0.413