(12 nodes) G protein alpha subunit, helical insertion network (Opisthorchis viverrini)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T265_12854	Uncharacterized protein. (475 aa)
	T265_04399	Uncharacterized protein. (353 aa)
	T265_07454	Uncharacterized protein. (1250 aa)
	T265_07748	G-protein alpha subunit. (355 aa)
	T265_07424	Uncharacterized protein. (221 aa)
	T265_08966	Uncharacterized protein. (353 aa)
	T265_10834	Uncharacterized protein. (455 aa)
	T265_00318	Uncharacterized protein. (583 aa)
	T265_01494	Uncharacterized protein. (276 aa)
	T265_08388	Uncharacterized protein. (274 aa)
	T265_09567	Uncharacterized protein. (491 aa)
	T265_03861	Uncharacterized protein. (345 aa)

Your Current Organism:

Opisthorchis viverrini

NCBI taxonomy Id: 6198
Other names: O. viverrini, Southeast Asian liver fluke

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T265_00318	T265_03861	A0A075AJS1	A0A075A1Z9	Uncharacterized protein.	Uncharacterized protein.	0.486
T265_00318	T265_07424	A0A075AJS1	A0A074ZCX1	Uncharacterized protein.	Uncharacterized protein.	0.481
T265_00318	T265_07748	A0A075AJS1	A0A074ZG94	Uncharacterized protein.	G-protein alpha subunit.	0.472
T265_00318	T265_08388	A0A075AJS1	A0A075A8J0	Uncharacterized protein.	Uncharacterized protein.	0.486
T265_00318	T265_10834	A0A075AJS1	A0A074Z161	Uncharacterized protein.	Uncharacterized protein.	0.485
T265_00318	T265_12854	A0A075AJS1	A0A075A1I6	Uncharacterized protein.	Uncharacterized protein.	0.509
T265_01494	T265_12854	A0A075A9L0	A0A075A1I6	Uncharacterized protein.	Uncharacterized protein.	0.422
T265_03861	T265_00318	A0A075A1Z9	A0A075AJS1	Uncharacterized protein.	Uncharacterized protein.	0.486
T265_03861	T265_09567	A0A075A1Z9	A0A075A4I7	Uncharacterized protein.	Uncharacterized protein.	0.470
T265_07424	T265_00318	A0A074ZCX1	A0A075AJS1	Uncharacterized protein.	Uncharacterized protein.	0.481
T265_07424	T265_09567	A0A074ZCX1	A0A075A4I7	Uncharacterized protein.	Uncharacterized protein.	0.482
T265_07424	T265_12854	A0A074ZCX1	A0A075A1I6	Uncharacterized protein.	Uncharacterized protein.	0.454
T265_07748	T265_00318	A0A074ZG94	A0A075AJS1	G-protein alpha subunit.	Uncharacterized protein.	0.472
T265_07748	T265_09567	A0A074ZG94	A0A075A4I7	G-protein alpha subunit.	Uncharacterized protein.	0.468
T265_08388	T265_00318	A0A075A8J0	A0A075AJS1	Uncharacterized protein.	Uncharacterized protein.	0.486
T265_08388	T265_09567	A0A075A8J0	A0A075A4I7	Uncharacterized protein.	Uncharacterized protein.	0.466
T265_09567	T265_03861	A0A075A4I7	A0A075A1Z9	Uncharacterized protein.	Uncharacterized protein.	0.470
T265_09567	T265_07424	A0A075A4I7	A0A074ZCX1	Uncharacterized protein.	Uncharacterized protein.	0.482
T265_09567	T265_07748	A0A075A4I7	A0A074ZG94	Uncharacterized protein.	G-protein alpha subunit.	0.468
T265_09567	T265_08388	A0A075A4I7	A0A075A8J0	Uncharacterized protein.	Uncharacterized protein.	0.466